AT3G55370 (OBP3)

Aliases : OBP3

Description : OBF-binding protein 3

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55370
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00010p00264070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT2G37590	DOF2.4, ATDOF2.4	DNA binding with one finger 2.4	0.05	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	Archaeplastida
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01021212001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01024986001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
Gb_12877	No alias	transcription factor (DOF)	0.03	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os01g64590.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g55610.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
LOC_Os05g02150.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
LOC_Os10g35300.2	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os12g38200.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Pp3c13_2000V3.1	No alias	cycling DOF factor 3	0.04	Archaeplastida
Pp3c22_5870V3.1	No alias	TARGET OF MONOPTEROS 6	0.04	Archaeplastida
Solyc01g096120.3.1	No alias	transcription factor (DOF)	0.1	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g090220.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g082840.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc04g079570.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g071480.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc06g075370.3.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
Solyc06g076030.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc09g010680.3.1	No alias	transcription factor (DOF)	0.09	Archaeplastida
Solyc10g086440.2.1	No alias	transcription factor (DOF)	0.14	Archaeplastida
Solyc11g066050.1.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Solyc11g072500.2.1	No alias	transcription factor (DOF)	0.08	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e015597_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e018163_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e023334_P001	No alias	transcription factor (DOF)	0.09	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.08	Archaeplastida
Zm00001e027634_P002	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e029641_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e041944_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IMP	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005884	actin filament	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006772	thiamine metabolic process	IEP	Neighborhood
BP	GO:0006825	copper ion transport	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
BP	GO:0009228	thiamine biosynthetic process	IEP	Neighborhood
BP	GO:0009682	induced systemic resistance	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0019172	glyoxalase III activity	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	Neighborhood
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1900409	positive regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1902882	regulation of response to oxidative stress	IEP	Neighborhood
BP	GO:1902884	positive regulation of response to oxidative stress	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	75	130

External Links

No external refs found!

AT3G55370 (OBP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation