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  5. AT3G57580

AT3G57580


Description : F-box and associated interaction domains-containing protein


Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G57580
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AT1G26515 No alias F-box and associated interaction domains-containing protein 0.08 Archaeplastida
AT1G30790 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G30925 No alias phospholipase Cs 0.06 Archaeplastida
AT1G31090 No alias F-box family protein 0.05 Archaeplastida
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT1G31620 No alias unknown protein; Has 9 Blast hits to 9 proteins in 2... 0.03 Archaeplastida
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G46840 No alias F-box family protein 0.05 Archaeplastida
AT1G47350 No alias F-box associated ubiquitination effector family protein 0.03 Archaeplastida
AT1G47730 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G47765 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT1G50880 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G52495 No alias No description available 0.04 Archaeplastida
AT1G53360 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT1G53370 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G61060 No alias F-box family protein 0.04 Archaeplastida
AT1G67130 No alias F-box family protein 0.05 Archaeplastida
AT2G16220 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT2G16450 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT2G16810 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT2G23160 No alias F-box family protein 0.04 Archaeplastida
AT2G31470 DOR F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT2G32470 No alias F-box associated ubiquitination effector family protein 0.07 Archaeplastida
AT2G40910 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT3G10240 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT3G52320 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT3G61340 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT4G19940 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT4G29970 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT4G38870 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G22791 No alias F-box family protein 0.04 Archaeplastida
AT5G42430 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G50220 No alias F-box family protein 0.04 Archaeplastida
AT5G52620 No alias F-box associated ubiquitination effector family protein 0.06 Archaeplastida
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G62660 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT5G65850 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity IEP Neighborhood
MF GO:0004078 biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005771 multivesicular body IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
BP GO:0007041 lysosomal transport IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008333 endosome to lysosome transport IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009691 cytokinin biosynthetic process IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009880 embryonic pattern specification IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010154 fruit development IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0018271 biotin-protein ligase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
CC GO:0030904 retromer complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
CC GO:0032300 mismatch repair complex IEP Neighborhood
CC GO:0032389 MutLalpha complex IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042966 biotin carboxyl carrier protein biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048766 root hair initiation IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
CC GO:1990391 DNA repair complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013187 F-box-assoc_dom_typ3 196 332
IPR001810 F-box_dom 9 50
No external refs found!