Coexpression cluster: Cluster_262 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016569 covalent chromatin modification 12.96% (7/54) 3.17 1.2e-05 0.001323
GO:0006139 nucleobase-containing compound metabolic process 31.48% (17/54) 1.73 6e-06 0.001339
GO:0048831 regulation of shoot system development 12.96% (7/54) 3.19 1.1e-05 0.001464
GO:0046483 heterocycle metabolic process 33.33% (18/54) 1.61 1e-05 0.001552
GO:0016570 histone modification 12.96% (7/54) 3.35 5e-06 0.001726
GO:0006807 nitrogen compound metabolic process 44.44% (24/54) 1.2 2.3e-05 0.001884
GO:0034641 cellular nitrogen compound metabolic process 33.33% (18/54) 1.52 2.1e-05 0.001979
GO:0043170 macromolecule metabolic process 40.74% (22/54) 1.26 3.3e-05 0.002367
GO:0090304 nucleic acid metabolic process 27.78% (15/54) 1.94 4e-06 0.002816
GO:0006325 chromatin organization 12.96% (7/54) 2.76 7.2e-05 0.003143
GO:0009909 regulation of flower development 11.11% (6/54) 3.1 7e-05 0.00326
GO:1901360 organic cyclic compound metabolic process 33.33% (18/54) 1.4 6.7e-05 0.003339
GO:0044424 intracellular part 92.59% (50/54) 0.4 6.4e-05 0.00347
GO:2000026 regulation of multicellular organismal development 12.96% (7/54) 2.71 8.9e-05 0.003631
GO:0006725 cellular aromatic compound metabolic process 31.48% (17/54) 1.39 0.00013 0.003683
GO:0051239 regulation of multicellular organismal process 12.96% (7/54) 2.65 0.000119 0.003692
GO:0044260 cellular macromolecule metabolic process 33.33% (18/54) 1.35 0.000109 0.003748
GO:0044238 primary metabolic process 48.15% (26/54) 1.04 6.4e-05 0.003777
GO:0044237 cellular metabolic process 50.0% (27/54) 0.97 9.9e-05 0.003804
GO:0006396 RNA processing 14.81% (8/54) 2.39 0.000129 0.00381
GO:0044464 cell part 96.3% (52/54) 0.32 0.000119 0.003858
GO:0006397 mRNA processing 7.41% (4/54) 4.02 0.000109 0.003939
GO:0016070 RNA metabolic process 20.37% (11/54) 2.02 6.3e-05 0.004127
GO:0048449 floral organ formation 7.41% (4/54) 3.87 0.000163 0.004434
GO:2000241 regulation of reproductive process 11.11% (6/54) 2.84 0.000183 0.004762
GO:0040029 regulation of gene expression, epigenetic 9.26% (5/54) 3.2 0.000209 0.004868
GO:0008380 RNA splicing 9.26% (5/54) 3.22 0.000196 0.004902
GO:0003006 developmental process involved in reproduction 22.22% (12/54) 1.72 0.000205 0.004954
GO:0006479 protein methylation 9.26% (5/54) 3.15 0.000246 0.005015
GO:0008213 protein alkylation 9.26% (5/54) 3.15 0.000246 0.005015
GO:0016571 histone methylation 9.26% (5/54) 3.17 0.000235 0.005273
GO:0000418 RNA polymerase IV complex 3.7% (2/54) 6.42 0.000244 0.005293
GO:0010608 posttranscriptional regulation of gene expression 7.41% (4/54) 3.68 0.000272 0.005374
GO:0000419 RNA polymerase V complex 3.7% (2/54) 6.3 0.000288 0.005512
GO:0008152 metabolic process 51.85% (28/54) 0.85 0.000304 0.005651
GO:0016246 RNA interference 5.56% (3/54) 4.5 0.000322 0.005672
GO:0016458 gene silencing 9.26% (5/54) 3.07 0.000316 0.005716
GO:0048580 regulation of post-embryonic development 11.11% (6/54) 2.66 0.000357 0.00612
GO:0051567 histone H3-K9 methylation 7.41% (4/54) 3.52 0.000417 0.006786
GO:0061647 histone H3-K9 modification 7.41% (4/54) 3.52 0.000417 0.006786
GO:0035194 posttranscriptional gene silencing by RNA 5.56% (3/54) 4.3 0.000483 0.007308
GO:0032259 methylation 11.11% (6/54) 2.58 0.000481 0.007451
GO:0043414 macromolecule methylation 11.11% (6/54) 2.58 0.000481 0.007451
GO:0018205 peptidyl-lysine modification 9.26% (5/54) 2.91 0.000533 0.007718
GO:0044267 cellular protein metabolic process 22.22% (12/54) 1.57 0.000526 0.007789
GO:1905393 plant organ formation 7.41% (4/54) 3.4 0.000564 0.007818
GO:0071704 organic substance metabolic process 48.15% (26/54) 0.86 0.000558 0.007898
GO:0006259 DNA metabolic process 12.96% (7/54) 2.26 0.000604 0.008192
GO:0016441 posttranscriptional gene silencing 5.56% (3/54) 4.14 0.000664 0.008825
GO:0000398 mRNA splicing, via spliceosome 5.56% (3/54) 4.02 0.000858 0.01117
GO:0018193 peptidyl-amino acid modification 9.26% (5/54) 2.67 0.001103 0.011971
GO:0009086 methionine biosynthetic process 5.56% (3/54) 3.97 0.000939 0.011984
GO:0018022 peptidyl-lysine methylation 7.41% (4/54) 3.14 0.001099 0.012123
GO:0000375 RNA splicing, via transesterification reactions 5.56% (3/54) 3.86 0.001178 0.01217
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.56% (3/54) 3.86 0.001178 0.01217
GO:0030880 RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012243
GO:0000428 DNA-directed RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012243
GO:0055029 nuclear DNA-directed RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012243
GO:0045814 negative regulation of gene expression, epigenetic 7.41% (4/54) 3.1 0.001226 0.01247
GO:0031047 gene silencing by RNA 7.41% (4/54) 3.18 0.000997 0.012485
GO:0006342 chromatin silencing 7.41% (4/54) 3.12 0.00117 0.012489
GO:0022414 reproductive process 22.22% (12/54) 1.46 0.001036 0.012723
GO:0006555 methionine metabolic process 5.56% (3/54) 3.9 0.001084 0.012832
GO:0006464 cellular protein modification process 18.52% (10/54) 1.62 0.001314 0.012964
GO:0036211 protein modification process 18.52% (10/54) 1.62 0.001314 0.012964
GO:0034968 histone lysine methylation 7.41% (4/54) 3.15 0.001081 0.013036
GO:0009067 aspartate family amino acid biosynthetic process 5.56% (3/54) 3.73 0.001526 0.014612
GO:0050793 regulation of developmental process 12.96% (7/54) 2.03 0.001514 0.014707
GO:0009892 negative regulation of metabolic process 11.11% (6/54) 2.23 0.001684 0.015889
GO:0043412 macromolecule modification 20.37% (11/54) 1.46 0.001723 0.016027
GO:0043231 intracellular membrane-bounded organelle 79.63% (43/54) 0.41 0.001777 0.016292
GO:0010420 polyprenyldihydroxybenzoate methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.016509
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 1.85% (1/54) 9.0 0.001953 0.016509
GO:0010426 DNA methylation on cytosine within a CHH sequence 1.85% (1/54) 9.0 0.001953 0.016509
GO:0051325 interphase 1.85% (1/54) 9.0 0.001953 0.016509
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.016509
GO:0048519 negative regulation of biological process 14.81% (8/54) 1.79 0.002012 0.01679
GO:0043227 membrane-bounded organelle 79.63% (43/54) 0.41 0.001859 0.016809
GO:0043226 organelle 79.63% (43/54) 0.39 0.002522 0.020525
GO:0009066 aspartate family amino acid metabolic process 5.56% (3/54) 3.47 0.002555 0.020538
GO:0043229 intracellular organelle 79.63% (43/54) 0.39 0.002498 0.020582
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 5.56% (3/54) 3.44 0.002715 0.021551
GO:0032774 RNA biosynthetic process 7.41% (4/54) 2.76 0.002871 0.022514
GO:0048646 anatomical structure formation involved in morphogenesis 7.41% (4/54) 2.75 0.002939 0.022779
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.7% (2/54) 4.61 0.003065 0.023473
GO:0016074 snoRNA metabolic process 1.85% (1/54) 8.0 0.003902 0.027311
GO:0001682 tRNA 5'-leader removal 1.85% (1/54) 8.0 0.003902 0.027311
GO:0034471 ncRNA 5'-end processing 1.85% (1/54) 8.0 0.003902 0.027311
GO:0043144 snoRNA processing 1.85% (1/54) 8.0 0.003902 0.027311
GO:0099116 tRNA 5'-end processing 1.85% (1/54) 8.0 0.003902 0.027311
GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process 1.85% (1/54) 8.0 0.003902 0.027311
GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 1.85% (1/54) 8.0 0.003902 0.027311
GO:0008676 3-deoxy-8-phosphooctulonate synthase activity 1.85% (1/54) 8.0 0.003902 0.027311
GO:0010629 negative regulation of gene expression 9.26% (5/54) 2.21 0.0044 0.030151
GO:0034654 nucleobase-containing compound biosynthetic process 11.11% (6/54) 1.95 0.004372 0.030277
GO:1901564 organonitrogen compound metabolic process 29.63% (16/54) 0.98 0.00473 0.031746
GO:0016071 mRNA metabolic process 7.41% (4/54) 2.56 0.004703 0.031894
GO:0006305 DNA alkylation 5.56% (3/54) 3.09 0.005272 0.03467
GO:0006306 DNA methylation 5.56% (3/54) 3.09 0.005272 0.03467
GO:0044728 DNA methylation or demethylation 5.56% (3/54) 3.08 0.005436 0.035389
GO:0006304 DNA modification 5.56% (3/54) 3.07 0.005519 0.035574
GO:0031538 negative regulation of anthocyanin metabolic process 1.85% (1/54) 7.42 0.005847 0.035907
GO:0000966 RNA 5'-end processing 1.85% (1/54) 7.42 0.005847 0.035907
GO:0005663 DNA replication factor C complex 1.85% (1/54) 7.42 0.005847 0.035907
GO:0044271 cellular nitrogen compound biosynthetic process 14.81% (8/54) 1.54 0.005689 0.03631
GO:0032502 developmental process 25.93% (14/54) 1.05 0.005762 0.036417
GO:0019538 protein metabolic process 22.22% (12/54) 1.15 0.006319 0.038444
GO:1903507 negative regulation of nucleic acid-templated transcription 7.41% (4/54) 2.42 0.006701 0.03966
GO:0045892 negative regulation of transcription, DNA-templated 7.41% (4/54) 2.42 0.006701 0.03966
GO:1902679 negative regulation of RNA biosynthetic process 7.41% (4/54) 2.42 0.006701 0.03966
GO:0018130 heterocycle biosynthetic process 12.96% (7/54) 1.63 0.007112 0.04097
GO:0006270 DNA replication initiation 3.7% (2/54) 3.98 0.007195 0.041086
GO:0051253 negative regulation of RNA metabolic process 7.41% (4/54) 2.39 0.007071 0.0411
GO:0007275 multicellular organism development 11.11% (6/54) 1.81 0.007037 0.041269
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 7.41% (4/54) 2.35 0.00785 0.04155
GO:0031053 primary miRNA processing 1.85% (1/54) 7.0 0.007788 0.041558
GO:0000339 RNA cap binding 1.85% (1/54) 7.0 0.007788 0.041558
GO:0033588 Elongator holoenzyme complex 1.85% (1/54) 7.0 0.007788 0.041558
GO:0031386 protein tag 1.85% (1/54) 7.0 0.007788 0.041558
GO:0043433 negative regulation of DNA-binding transcription factor activity 1.85% (1/54) 7.0 0.007788 0.041558
GO:0010605 negative regulation of macromolecule metabolic process 9.26% (5/54) 2.03 0.007374 0.041741
GO:0048856 anatomical structure development 16.67% (9/54) 1.35 0.008027 0.041802
GO:0009987 cellular process 51.85% (28/54) 0.57 0.007998 0.041989
GO:0032446 protein modification by small protein conjugation 5.56% (3/54) 2.86 0.00816 0.042162
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 7.41% (4/54) 2.36 0.00765 0.042568
GO:0010558 negative regulation of macromolecule biosynthetic process 7.41% (4/54) 2.36 0.00765 0.042568
GO:0031327 negative regulation of cellular biosynthetic process 7.41% (4/54) 2.32 0.00833 0.0427
GO:0009890 negative regulation of biosynthetic process 7.41% (4/54) 2.31 0.008613 0.043804
GO:0005634 nucleus 50.0% (27/54) 0.58 0.008965 0.04524
GO:0031109 microtubule polymerization or depolymerization 1.85% (1/54) 6.68 0.009726 0.04725
GO:0010306 rhamnogalacturonan II biosynthetic process 1.85% (1/54) 6.68 0.009726 0.04725
GO:0051090 regulation of DNA-binding transcription factor activity 1.85% (1/54) 6.68 0.009726 0.04725
GO:0010396 rhamnogalacturonan II metabolic process 1.85% (1/54) 6.68 0.009726 0.04725
GO:0046785 microtubule polymerization 1.85% (1/54) 6.68 0.009726 0.04725
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_40 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_54 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_218 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_233 0.033 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_236 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_79 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_160 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_64 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_77 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_152 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_309 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_337 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_338 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_142 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_250 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_283 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_87 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_116 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_175 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_133 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_222 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_158 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_287 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_376 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_505 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.033 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_155 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_169 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_204 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_159 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_189 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_213 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.02 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_141 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_147 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_166 0.02 Archaeplastida Compare
Sequences (54) (download table)

InterPro Domains

GO Terms

Family Terms