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Description : component RPP2 of LSU proteome component
Gene families : OG0001112 (Archaeplastida) Phylogenetic Tree(s): OG0001112_tree ,
OG_05_0001212 (LandPlants) Phylogenetic Tree(s): OG_05_0001212_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp1g06260.1 | |
| Cluster | HCCA: Cluster_36 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00177850 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | Archaeplastida | |
| AT2G27710 | No alias | 60S acidic ribosomal protein family | 0.19 | Archaeplastida | |
| AT2G27720 | No alias | 60S acidic ribosomal protein family | 0.14 | Archaeplastida | |
| AT3G44590 | No alias | 60S acidic ribosomal protein family | 0.15 | Archaeplastida | |
| Cpa|evm.model.tig00020830.75 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | Archaeplastida | |
| Cre02.g143050 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.24 | Archaeplastida | |
| GSVIVT01031366001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | Archaeplastida | |
| GSVIVT01033814001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.21 | Archaeplastida | |
| GSVIVT01034757001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | Archaeplastida | |
| LOC_Os01g09510.4 | No alias | component RPP2 of LSU proteome component | 0.15 | Archaeplastida | |
| MA_10431146g0010 | No alias | component RPP2 of LSU proteome component | 0.08 | Archaeplastida | |
| MA_177584g0010 | No alias | component RPP2 of LSU proteome component | 0.12 | Archaeplastida | |
| MA_8598039g0010 | No alias | component RPP2 of LSU proteome component | 0.12 | Archaeplastida | |
| Pp3c10_2900V3.1 | No alias | 60S acidic ribosomal protein family | 0.22 | Archaeplastida | |
| Pp3c14_7080V3.1 | No alias | 60S acidic ribosomal protein family | 0.18 | Archaeplastida | |
| Pp3c1_27060V3.1 | No alias | 60S acidic ribosomal protein family | 0.28 | Archaeplastida | |
| Pp3c2_15480V3.1 | No alias | 60S acidic ribosomal protein family | 0.22 | Archaeplastida | |
| Pp3c6_20310V3.1 | No alias | 60S acidic ribosomal protein family | 0.2 | Archaeplastida | |
| Smo139397 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | Archaeplastida | |
| Solyc01g009447.1.1 | No alias | component RPP2 of LSU proteome component | 0.11 | Archaeplastida | |
| Solyc06g074430.4.1 | No alias | component RPP2 of LSU proteome component | 0.03 | Archaeplastida | |
| Solyc11g067100.2.1 | No alias | component RPP2 of LSU proteome component | 0.23 | Archaeplastida | |
| Zm00001e006597_P001 | No alias | component RPP2 of LSU proteome component | 0.12 | Archaeplastida | |
| Zm00001e026591_P001 | No alias | component RPP2 of LSU proteome component | 0.22 | Archaeplastida | |
| Zm00001e026592_P001 | No alias | component RPP2 of LSU proteome component | 0.22 | Archaeplastida | |
| Zm00001e026593_P001 | No alias | component RPP2 of LSU proteome component | 0.22 | Archaeplastida | |
| Zm00001e026594_P001 | No alias | no hits & (original description: none) | 0.12 | Archaeplastida | |
| Zm00001e041900_P001 | No alias | component RPP2 of LSU proteome component | 0.22 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0003746 | translation elongation factor activity | IEP | Neighborhood |
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006414 | translational elongation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| MF | GO:0031369 | translation initiation factor binding | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
| CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |