AT3G58780 (AGL1, SHP1)

Aliases : AGL1, SHP1

Description : K-box region and MADS-box transcription factor family protein

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0001300 (SeedPlants) Phylogenetic Tree(s): OG_06_0001300_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G58780
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00001p00267050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00270400	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00002p00262760	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00071p00198520	evm_27.TU.AmTr_v1...	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.04	Archaeplastida
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.03	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.04	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.09	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.06	Archaeplastida
GSVIVT01018446001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.09	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_31417	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os04g52410.2	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os05g34940.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os08g41950.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os09g02780.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_130755g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.03	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
Solyc02g089200.4.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc03g114830.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc05g015750.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.06	Archaeplastida
Solyc07g055920.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003670_P002	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e015447_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e015728_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009886	post-embryonic animal morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0010047	fruit dehiscence	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	IMP	Interproscan
BP	GO:0048441	petal development	RCA	Interproscan
BP	GO:0048443	stamen development	RCA	Interproscan
BP	GO:0048481	plant ovule development	IMP	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0003785	actin monomer binding	IEP	Neighborhood
MF	GO:0003840	obsolete gamma-glutamyltransferase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
BP	GO:0006071	glycerol metabolic process	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
BP	GO:0008360	regulation of cell shape	IEP	Neighborhood
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	Neighborhood
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0010048	vernalization response	IEP	Neighborhood
BP	GO:0010093	specification of floral organ identity	IEP	Neighborhood
CC	GO:0010169	thioglucosidase complex	IEP	Neighborhood
MF	GO:0010180	thioglucosidase binding	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010430	fatty acid omega-oxidation	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019400	alditol metabolic process	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
CC	GO:0031209	SCAR complex	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043424	protein histidine kinase binding	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
BP	GO:0043900	regulation of multi-organism process	IEP	Neighborhood
MF	GO:0046593	mandelonitrile lyase activity	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048832	specification of plant organ number	IEP	Neighborhood
BP	GO:0048833	specification of floral organ number	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051125	regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051127	positive regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
BP	GO:0080051	cutin transport	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0080154	regulation of fertilization	IEP	Neighborhood
BP	GO:0080155	regulation of double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0080172	petal epidermis patterning	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0090701	specification of plant organ identity	IEP	Neighborhood
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Neighborhood
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000029	regulation of proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000762	regulation of phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	100	186
IPR002100	TF_MADSbox	25	72

External Links

No external refs found!

AT3G58780 (AGL1, SHP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation