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  5. AT3G58820

AT3G58820


Description : F-box/RNI-like superfamily protein


Gene families : OG0000914 (Archaeplastida) Phylogenetic Tree(s): OG0000914_tree ,
OG_05_0000543 (LandPlants) Phylogenetic Tree(s): OG_05_0000543_tree ,
OG_06_0000263 (SeedPlants) Phylogenetic Tree(s): OG_06_0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58820
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.05 Archaeplastida
AT3G54160 No alias RNI-like superfamily protein 0.03 Archaeplastida
AT3G59240 No alias RNI-like superfamily protein 0.04 Archaeplastida
AT4G13960 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G25860 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT5G38392 No alias No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003941 L-serine ammonia-lyase activity IEP Neighborhood
MF GO:0004817 cysteine-tRNA ligase activity IEP Neighborhood
MF GO:0005200 structural constituent of cytoskeleton IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005290 L-histidine transmembrane transporter activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006360 transcription by RNA polymerase I IEP Neighborhood
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008721 D-serine ammonia-lyase activity IEP Neighborhood
BP GO:0010219 regulation of vernalization response IEP Neighborhood
BP GO:0010221 negative regulation of vernalization response IEP Neighborhood
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015174 basic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015181 arginine transmembrane transporter activity IEP Neighborhood
MF GO:0015189 L-lysine transmembrane transporter activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016841 ammonia-lyase activity IEP Neighborhood
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Neighborhood
MF GO:0030378 serine racemase activity IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Neighborhood
BP GO:0046416 D-amino acid metabolic process IEP Neighborhood
MF GO:0047661 amino-acid racemase activity IEP Neighborhood
BP GO:0070178 D-serine metabolic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901474 azole transmembrane transporter activity IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 5 39
No external refs found!