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  5. Mp1g27390.1

Mp1g27390.1


Description : component LSm4 of U6-associated LSm accessory ribonucleoprotein complex


Gene families : OG0001157 (Archaeplastida) Phylogenetic Tree(s): OG0001157_tree ,
OG_05_0006897 (LandPlants) Phylogenetic Tree(s): OG_05_0006897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g27390.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000480.60 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
GSVIVT01027881001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
GSVIVT01031139001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 Archaeplastida
Pp3c14_11180V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Solyc01g099740.4.1 No alias component LSm4 of U6-associated LSm accessory... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 70
No external refs found!