AT3G61180

Description : RING/U-box superfamily protein

Gene families : OG0001009 (Archaeplastida) Phylogenetic Tree(s): OG0001009_tree ,
OG_05_0001347 (LandPlants) Phylogenetic Tree(s): OG_05_0001347_tree ,
OG_06_0001207 (SeedPlants) Phylogenetic Tree(s): OG_06_0001207_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61180
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10432801g0010	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc01g091600.4.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000303	response to superoxide	IEP	Neighborhood
BP	GO:0000305	response to oxygen radical	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0003827	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	Neighborhood
MF	GO:0004057	arginyltransferase activity	IEP	Neighborhood
MF	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	IEP	Neighborhood
MF	GO:0004707	MAP kinase activity	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006491	N-glycan processing	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009100	glycoprotein metabolic process	IEP	Neighborhood
BP	GO:0009556	microsporogenesis	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009648	photoperiodism	IEP	Neighborhood
BP	GO:0009734	auxin-activated signaling pathway	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0010025	wax biosynthetic process	IEP	Neighborhood
BP	GO:0010029	regulation of seed germination	IEP	Neighborhood
BP	GO:0010143	cutin biosynthetic process	IEP	Neighborhood
BP	GO:0010150	leaf senescence	IEP	Neighborhood
BP	GO:0010166	wax metabolic process	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010374	stomatal complex development	IEP	Neighborhood
MF	GO:0016262	protein N-acetylglucosaminyltransferase activity	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
BP	GO:0016598	protein arginylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Neighborhood
BP	GO:0019216	regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0034293	sexual sporulation	IEP	Neighborhood
MF	GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	IEP	Neighborhood
MF	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0042752	regulation of circadian rhythm	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
MF	GO:0043813	phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	IEP	Neighborhood
BP	GO:0043934	sporulation	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
BP	GO:0046164	alcohol catabolic process	IEP	Neighborhood
BP	GO:0046174	polyol catabolic process	IEP	Neighborhood
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Neighborhood
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Neighborhood
BP	GO:0048236	plant-type sporogenesis	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048573	photoperiodism, flowering	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0050994	regulation of lipid catabolic process	IEP	Neighborhood
BP	GO:0051321	meiotic cell cycle	IEP	Neighborhood
BP	GO:0051341	regulation of oxidoreductase activity	IEP	Neighborhood
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	Neighborhood
BP	GO:0052386	cell wall thickening	IEP	Neighborhood
BP	GO:0052543	callose deposition in cell wall	IEP	Neighborhood
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
MF	GO:0070300	phosphatidic acid binding	IEP	Neighborhood
BP	GO:0071545	inositol phosphate catabolic process	IEP	Neighborhood
BP	GO:0080022	primary root development	IEP	Neighborhood
BP	GO:0090558	plant epidermis development	IEP	Neighborhood
BP	GO:0090693	plant organ senescence	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
MF	GO:0106018	phosphatidylinositol-3,5-bisphosphate phosphatase activity	IEP	Neighborhood
MF	GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
BP	GO:1900490	positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Neighborhood
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Neighborhood
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Neighborhood
BP	GO:2001215	regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	322	364

External Links

No external refs found!

AT3G61180

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation