AT3G61340

Description : F-box and associated interaction domains-containing protein

Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61340
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AT1G23037	No alias	F-box associated ubiquitination effector family protein	0.04	Archaeplastida
AT1G30790	No alias	F-box and associated interaction domains-containing protein	0.09	Archaeplastida
AT1G30920	No alias	F-box family protein	0.05	Archaeplastida
AT1G30925	No alias	phospholipase Cs	0.08	Archaeplastida
AT1G30930	No alias	F-box family protein	0.05	Archaeplastida
AT1G31090	No alias	F-box family protein	0.08	Archaeplastida
AT1G31163	No alias	F-box associated ubiquitination effector family protein	0.09	Archaeplastida
AT1G31620	No alias	unknown protein; Has 9 Blast hits to 9 proteins in 2...	0.07	Archaeplastida
AT1G32420	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT1G32660	No alias	F-box and associated interaction domains-containing protein	0.13	Archaeplastida
AT1G33010	No alias	F-box and associated interaction domains-containing protein	0.08	Archaeplastida
AT1G33020	No alias	F-box and associated interaction domains-containing protein	0.02	Archaeplastida
AT1G46840	No alias	F-box family protein	0.12	Archaeplastida
AT1G47765	No alias	F-box and associated interaction domains-containing protein	0.08	Archaeplastida
AT1G47810	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT1G50880	No alias	F-box and associated interaction domains-containing protein	0.11	Archaeplastida
AT1G52495	No alias	No description available	0.02	Archaeplastida
AT1G53360	No alias	F-box associated ubiquitination effector family protein	0.11	Archaeplastida
AT1G53370	No alias	F-box and associated interaction domains-containing protein	0.1	Archaeplastida
AT1G53815	No alias	F-box family protein	0.05	Archaeplastida
AT1G55070	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT1G60370	No alias	F-box and associated interaction domains-containing protein	0.09	Archaeplastida
AT1G61060	No alias	F-box family protein	0.07	Archaeplastida
AT1G67130	No alias	F-box family protein	0.09	Archaeplastida
AT2G02890	No alias	F-box family protein	0.05	Archaeplastida
AT2G16220	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT2G16450	No alias	F-box and associated interaction domains-containing protein	0.08	Archaeplastida
AT2G16810	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT2G23160	No alias	F-box family protein	0.12	Archaeplastida
AT2G31470	DOR	F-box and associated interaction domains-containing protein	0.09	Archaeplastida
AT2G32470	No alias	F-box associated ubiquitination effector family protein	0.11	Archaeplastida
AT2G40910	No alias	F-box and associated interaction domains-containing protein	0.02	Archaeplastida
AT3G10790	No alias	F-box associated ubiquitination effector family protein	0.04	Archaeplastida
AT3G47150	No alias	F-box and associated interaction domains-containing protein	0.02	Archaeplastida
AT3G49440	No alias	F-box associated ubiquitination effector family protein	0.02	Archaeplastida
AT3G52320	No alias	F-box and associated interaction domains-containing protein	0.1	Archaeplastida
AT3G57580	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT4G13060	No alias	F-box associated ubiquitination effector family protein	0.03	Archaeplastida
AT4G19930	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT4G19940	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT4G29970	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT5G15670	No alias	F-box family protein	0.02	Archaeplastida
AT5G18160	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G22791	No alias	F-box family protein	0.06	Archaeplastida
AT5G38810	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G42430	No alias	F-box and associated interaction domains-containing protein	0.08	Archaeplastida
AT5G44345	No alias	F-box associated ubiquitination effector family protein	0.08	Archaeplastida
AT5G50220	No alias	F-box family protein	0.04	Archaeplastida
AT5G62060	No alias	F-box and associated interaction domains-containing protein	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007129	synapsis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Neighborhood
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0000987	proximal promoter sequence-specific DNA binding	IEP	Neighborhood
CC	GO:0001673	male germ cell nucleus	IEP	Neighborhood
MF	GO:0004108	citrate (Si)-synthase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006099	tricarboxylic acid cycle	IEP	Neighborhood
BP	GO:0006101	citrate metabolic process	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0010098	suspensor development	IEP	Neighborhood
BP	GO:0010212	response to ionizing radiation	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
BP	GO:0010222	stem vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010332	response to gamma radiation	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
MF	GO:0030332	cyclin binding	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0032204	regulation of telomere maintenance	IEP	Neighborhood
BP	GO:0032504	multicellular organism reproduction	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0033044	regulation of chromosome organization	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0036440	citrate synthase activity	IEP	Neighborhood
CC	GO:0043073	germ cell nucleus	IEP	Neighborhood
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	Neighborhood
BP	GO:0045132	meiotic chromosome segregation	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
BP	GO:0048598	embryonic morphogenesis	IEP	Neighborhood
BP	GO:0048830	adventitious root development	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0080159	zygote elongation	IEP	Neighborhood
BP	GO:0098813	nuclear chromosome segregation	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013187	F-box-assoc_dom_typ3	229	365
IPR001810	F-box_dom	22	59

External Links

No external refs found!

AT3G61340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation