AT4G00120 (GT140, IND1, IND, EDA33)

Aliases : GT140, IND1, IND, EDA33

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00120
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00265010	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AMTR_s00024p00250370	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
AT1G09530	PIF3, POC1, PAP3	phytochrome interacting factor 3	0.05	Archaeplastida
AT1G27740	RSL4	root hair defective 6-like 4	0.03	Archaeplastida
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.05	Archaeplastida
AT2G43010	SRL2, PIF4, AtPIF4	phytochrome interacting factor 4	0.05	Archaeplastida
AT2G46970	PIL1	phytochrome interacting factor 3-like 1	0.05	Archaeplastida
AT3G21330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT3G50330	HEC2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.08	Archaeplastida
AT5G01305	No alias	No description available	0.04	Archaeplastida
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.05	Archaeplastida
AT5G67060	HEC1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.08	Archaeplastida
GSVIVT01018165001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
GSVIVT01022120001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	Archaeplastida
GSVIVT01028516001	No alias	External stimuli response.light.red/far red light.PIF...	0.04	Archaeplastida
GSVIVT01030333001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Gb_06182	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Gb_12264	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Gb_27869	No alias	transcription factor (bHLH)	0.05	Archaeplastida
LOC_Os01g02110.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os01g61480.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os06g10820.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
LOC_Os06g47980.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os08g01700.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_10156436g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_29186g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_83500g0010	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Mp3g23300.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Mp5g18910.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Pp3c10_19020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c1_40040V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c3_8460V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.02	Archaeplastida
Smo405220	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc01g107140.3.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc02g090950.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc02g091440.2.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc02g093280.2.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc04g077960.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc09g005070.1.1	No alias	transcription factor (bHLH)	0.09	Archaeplastida
Solyc11g005780.3.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Solyc12g088380.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc12g088790.3.1	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Zm00001e005046_P003	No alias	transcription factor (bHLH). PIF red/far-red light...	0.03	Archaeplastida
Zm00001e006917_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e015610_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e020012_P001	No alias	transcription factor (bHLH)	0.08	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e025454_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e025656_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e027758_P002	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Zm00001e029147_P001	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Zm00001e032280_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e034339_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e041668_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010197	polar nucleus fusion	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003999	adenine phosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004312	fatty acid synthase activity	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
BP	GO:0006144	purine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0006168	adenine salvage	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006723	cuticle hydrocarbon biosynthetic process	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
MF	GO:0008429	phosphatidylethanolamine binding	IEP	Neighborhood
BP	GO:0009112	nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0009911	positive regulation of flower development	IEP	Neighborhood
MF	GO:0009922	fatty acid elongase activity	IEP	Neighborhood
BP	GO:0010025	wax biosynthetic process	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	Neighborhood
BP	GO:0010093	specification of floral organ identity	IEP	Neighborhood
BP	GO:0010154	fruit development	IEP	Neighborhood
BP	GO:0010166	wax metabolic process	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0016104	triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0019953	sexual reproduction	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
MF	GO:0042299	lupeol synthase activity	IEP	Neighborhood
MF	GO:0042300	beta-amyrin synthase activity	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
BP	GO:0043096	purine nucleobase salvage	IEP	Neighborhood
BP	GO:0043101	purine-containing compound salvage	IEP	Neighborhood
BP	GO:0043446	cellular alkane metabolic process	IEP	Neighborhood
BP	GO:0043447	alkane biosynthetic process	IEP	Neighborhood
BP	GO:0044703	multi-organism reproductive process	IEP	Neighborhood
BP	GO:0046083	adenine metabolic process	IEP	Neighborhood
BP	GO:0046084	adenine biosynthetic process	IEP	Neighborhood
BP	GO:0046112	nucleobase biosynthetic process	IEP	Neighborhood
MF	GO:0047196	long-chain-alcohol O-fatty-acyltransferase activity	IEP	Neighborhood
BP	GO:0048235	pollen sperm cell differentiation	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048582	positive regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
BP	GO:0090701	specification of plant organ identity	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
MF	GO:0106130	purine phosphoribosyltransferase activity	IEP	Neighborhood
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Neighborhood
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood
BP	GO:2000243	positive regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	127	167

External Links

No external refs found!

AT4G00120 (GT140, IND1, IND, EDA33)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation