AT4G00480 (myc1, ATMYC1)

Aliases : myc1, ATMYC1

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0002624 (Archaeplastida) Phylogenetic Tree(s): OG0002624_tree ,
OG_05_0002177 (LandPlants) Phylogenetic Tree(s): OG_05_0002177_tree ,
OG_06_0001598 (SeedPlants) Phylogenetic Tree(s): OG_06_0001598_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00480
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01019750001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc08g081140.4.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	RCA	Interproscan
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007267	cell-cell signaling	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009913	epidermal cell differentiation	RCA	Interproscan
BP	GO:0009957	epidermal cell fate specification	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030855	epithelial cell differentiation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	None	Extended
BP	GO:0048629	trichome patterning	IMP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009615	response to virus	IEP	Neighborhood
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0051607	defense response to virus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025610	MYC/MYB_N	23	216

External Links

No external refs found!

AT4G00480 (myc1, ATMYC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation