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Description : SCL28/30/33 RNA splicing factor
Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp4g01880.1 | |
| Cluster | HCCA: Cluster_12 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00012p00222900 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | Archaeplastida | |
| AT3G13570 | At-SCL30A, SCL30A | SC35-like splicing factor 30A | 0.03 | Archaeplastida | |
| GSVIVT01001344001 | No alias | No description available | 0.02 | Archaeplastida | |
| GSVIVT01025432001 | No alias | Serine/arginine-rich SC35-like splicing factor SCL30A... | 0.02 | Archaeplastida | |
| LOC_Os02g15310.1 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida | |
| LOC_Os03g24890.1 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida | |
| MA_122608g0010 | No alias | SCL28/30/33 RNA splicing factor | 0.04 | Archaeplastida | |
| MA_89588g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Pp3c5_15600V3.1 | No alias | SC35-like splicing factor 30A | 0.02 | Archaeplastida | |
| Pp3s152_10V3.1 | No alias | SC35-like splicing factor 30A | 0.03 | Archaeplastida | |
| Solyc01g005820.4.1 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida | |
| Zm00001e002967_P002 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida | |
| Zm00001e038130_P001 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| BP | GO:0000723 | telomere maintenance | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0005319 | lipid transporter activity | IEP | Neighborhood |
| MF | GO:0005548 | phospholipid transporter activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006270 | DNA replication initiation | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006302 | double-strand break repair | IEP | Neighborhood |
| BP | GO:0006333 | chromatin assembly or disassembly | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006869 | lipid transport | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0015748 | organophosphate ester transport | IEP | Neighborhood |
| BP | GO:0015914 | phospholipid transport | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016790 | thiolester hydrolase activity | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
| CC | GO:0030915 | Smc5-Smc6 complex | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0032200 | telomere organization | IEP | Neighborhood |
| BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
| BP | GO:0060249 | anatomical structure homeostasis | IEP | Neighborhood |
| BP | GO:0061024 | membrane organization | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| CC | GO:0106068 | SUMO ligase complex | IEP | Neighborhood |
| BP | GO:0120009 | intermembrane lipid transfer | IEP | Neighborhood |
| MF | GO:0120013 | intermembrane lipid transfer activity | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 40 | 111 |
| No external refs found! |