AT4G02195 (ATSYP42, SYP42, ATTLG2B, TLG2B)

Aliases : ATSYP42, SYP42, ATTLG2B, TLG2B

Description : syntaxin of plants 42

Gene families : OG0003410 (Archaeplastida) Phylogenetic Tree(s): OG0003410_tree ,
OG_05_0004541 (LandPlants) Phylogenetic Tree(s): OG_05_0004541_tree ,
OG_06_0004549 (SeedPlants) Phylogenetic Tree(s): OG_06_0004549_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02195
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AT3G05710	SYP43, ATSYP43	syntaxin of plants 43	0.03	Archaeplastida
GSVIVT01031201001	No alias	Vesicle trafficking.SNARE target membrane recognition...	0.04	Archaeplastida
LOC_Os06g02570.1	No alias	SYP4-group Qa-type SNARE component	0.03	Archaeplastida
Mp2g14140.1	No alias	SYP4-group Qa-type SNARE component	0.02	Archaeplastida
Zm00001e016500_P001	No alias	SYP4-group Qa-type SNARE component	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0002790	peptide secretion	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005798	Golgi-associated vesicle	None	Extended
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
CC	GO:0005802	trans-Golgi network	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	TAS	Interproscan
BP	GO:0006891	intra-Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	IGI	Interproscan
BP	GO:0007034	vacuolar transport	IGI	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009306	protein secretion	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
CC	GO:0030133	transport vesicle	None	Extended
CC	GO:0030135	coated vesicle	None	Extended
CC	GO:0030136	clathrin-coated vesicle	None	Extended
CC	GO:0030140	trans-Golgi network transport vesicle	TAS	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032940	secretion by cell	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043900	regulation of multi-organism process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046903	secretion	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi subcompartment	None	Extended
BP	GO:1900150	regulation of defense response to fungus	IGI	Interproscan
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000164	protein phosphatase type 1 complex	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006470	protein dephosphorylation	IEP	Neighborhood
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Neighborhood
MF	GO:0008327	methyl-CpG binding	IEP	Neighborhood
BP	GO:0009691	cytokinin biosynthetic process	IEP	Neighborhood
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010185	regulation of cellular defense response	IEP	Neighborhood
BP	GO:0010186	positive regulation of cellular defense response	IEP	Neighborhood
BP	GO:0010271	regulation of chlorophyll catabolic process	IEP	Neighborhood
BP	GO:0010351	lithium ion transport	IEP	Neighborhood
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0031329	regulation of cellular catabolic process	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0043455	regulation of secondary metabolic process	IEP	Neighborhood
BP	GO:0045827	negative regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Neighborhood
MF	GO:0052381	tRNA dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Neighborhood
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0090056	regulation of chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0090359	negative regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:1901404	regulation of tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1902931	negative regulation of alcohol biosynthetic process	IEP	Neighborhood
CC	GO:1903293	phosphatase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000727	T_SNARE_dom	263	315

External Links

No external refs found!

AT4G02195 (ATSYP42, SYP42, ATTLG2B, TLG2B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation