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  5. Mp4g12650.1

Mp4g12650.1


Description : pseudouridine synthase component Nap57/CBF5 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG0004601 (Archaeplastida) Phylogenetic Tree(s): OG0004601_tree ,
OG_05_0004875 (LandPlants) Phylogenetic Tree(s): OG_05_0004875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g12650.1
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 evm_27.TU.AmTr_v1... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.07 Archaeplastida
Cpa|evm.model.tig00000553.10 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.08 Archaeplastida
Cre03.g172950 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.06 Archaeplastida
GSVIVT01034188001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
Gb_32372 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 Archaeplastida
Gb_34541 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 Archaeplastida
MA_27456g0030 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 Archaeplastida
Pp3c22_210V3.1 No alias homologue of NAP57 0.07 Archaeplastida
Smo81986 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
Solyc02g081810.4.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.1 Archaeplastida
Zm00001e017259_P001 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004055 argininosuccinate synthase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006525 arginine metabolic process IEP Neighborhood
BP GO:0006526 arginine biosynthetic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002478 PUA 301 373
IPR012960 Dyskerin-like 53 110
IPR032819 TruB_C 231 297
IPR002501 PsdUridine_synth_N 114 230
No external refs found!