AT4G02300

Description : Plant invertase/pectin methylesterase inhibitor superfamily

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02300
Cluster	HCCA: Cluster_210

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00239700	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00040p00188020	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00040p00233690	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00129p00044320	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00129p00074780	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AT1G02810	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT3G49220	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	Archaeplastida
AT4G00190	PME38, ATPME38	pectin methylesterase 38	0.05	Archaeplastida
AT5G27870	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
GSVIVT01031164001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
Gb_03174	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_05254	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_06356	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_10522	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_18512	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_21388	No alias	pectin methylesterase	0.05	Archaeplastida
Gb_25439	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_35881	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os01g21034.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os01g65790.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os02g54190.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os04g38560.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os04g54850.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os05g29790.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os06g09340.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os07g47830.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g08750.1	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10332149g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10434127g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10434786g0010	No alias	No annotation	0.04	Archaeplastida
MA_158002g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_26888g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_51464g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_648837g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_931259g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Mp8g00060.1	No alias	pectin methylesterase	0.04	Archaeplastida
Mp8g09330.1	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c17_6440V3.1	No alias	pectin methylesterase PCR fragment F	0.02	Archaeplastida
Pp3c18_170V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
Pp3c21_11740V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
Pp3c26_2170V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
Smo266995	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
Smo420760	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc01g099960.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc02g014300.2.1	No alias	pectin methylesterase	0.05	Archaeplastida
Solyc03g078100.3.1	No alias	pectin methylesterase	0.05	Archaeplastida
Solyc03g083840.3.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc03g083870.4.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc07g017600.3.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc09g075350.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e004056_P002	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e009863_P001	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e011069_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e014142_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e025576_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e034231_P001	No alias	pectin methylesterase	0.04	Archaeplastida
Zm00001e041006_P001	No alias	pectin methylesterase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0042742	defense response to bacterium	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050829	defense response to Gram-negative bacterium	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
BP	GO:0080113	regulation of seed growth	IEP	Neighborhood
BP	GO:2000014	regulation of endosperm development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	222	517
IPR006501	Pectinesterase_inhib_dom	46	152

External Links

No external refs found!

AT4G02300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation