AT4G04020 (FIB)

Aliases : FIB

Description : fibrillin

Gene families : OG0001860 (Archaeplastida) Phylogenetic Tree(s): OG0001860_tree ,
OG_05_0002761 (LandPlants) Phylogenetic Tree(s): OG_05_0002761_tree ,
OG_06_0002525 (SeedPlants) Phylogenetic Tree(s): OG_06_0002525_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G04020

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00122150	evm_27.TU.AmTr_v1...	Light-induced protein, chloroplastic OS=Solanum tuberosum	0.03	Archaeplastida
AMTR_s00028p00216930	evm_27.TU.AmTr_v1...	Light-induced protein, chloroplastic OS=Solanum tuberosum	0.02	Archaeplastida
Gb_21445	No alias	Plastid lipid-associated protein 3, chloroplastic...	0.02	Archaeplastida
Solyc02g081170.4.1	No alias	Light-induced protein, chloroplastic OS=Solanum...	0.08	Archaeplastida
Solyc08g005220.4.1	No alias	Probable plastid-lipid-associated protein 3,...	0.03	Archaeplastida
Zm00001e040997_P002	No alias	Probable plastid-lipid-associated protein 2,...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010109	regulation of photosynthesis	None	Extended
BP	GO:0010205	photoinhibition	IMP	Interproscan
CC	GO:0010287	plastoglobule	IDA	Interproscan
CC	GO:0010319	stromule	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031977	thylakoid lumen	IDA	Interproscan
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0033993	response to lipid	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042548	regulation of photosynthesis, light reaction	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043155	negative regulation of photosynthesis, light reaction	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043467	regulation of generation of precursor metabolites and energy	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1905156	negative regulation of photosynthesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Neighborhood
MF	GO:0003988	acetyl-CoA C-acyltransferase activity	IEP	Neighborhood
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Neighborhood
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	Neighborhood
MF	GO:0004029	aldehyde dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	Neighborhood
MF	GO:0004301	epoxide hydrolase activity	IEP	Neighborhood
MF	GO:0004445	inositol-polyphosphate 5-phosphatase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004506	squalene monooxygenase activity	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	Neighborhood
MF	GO:0004664	prephenate dehydratase activity	IEP	Neighborhood
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0004733	pyridoxamine-phosphate oxidase activity	IEP	Neighborhood
MF	GO:0004805	trehalose-phosphatase activity	IEP	Neighborhood
MF	GO:0004829	threonine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005350	pyrimidine nucleobase transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0005513	detection of calcium ion	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
CC	GO:0005955	calcineurin complex	IEP	Neighborhood
BP	GO:0005984	disaccharide metabolic process	IEP	Neighborhood
BP	GO:0005985	sucrose metabolic process	IEP	Neighborhood
BP	GO:0005986	sucrose biosynthetic process	IEP	Neighborhood
BP	GO:0005987	sucrose catabolic process	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Neighborhood
BP	GO:0006570	tyrosine metabolic process	IEP	Neighborhood
BP	GO:0006571	tyrosine biosynthetic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006971	hypotonic response	IEP	Neighborhood
BP	GO:0007623	circadian rhythm	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0008614	pyridoxine metabolic process	IEP	Neighborhood
BP	GO:0008615	pyridoxine biosynthetic process	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Neighborhood
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Neighborhood
BP	GO:0009299	mRNA transcription	IEP	Neighborhood
BP	GO:0009311	oligosaccharide metabolic process	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0009313	oligosaccharide catabolic process	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009413	response to flooding	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009812	flavonoid metabolic process	IEP	Neighborhood
BP	GO:0009813	flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009819	drought recovery	IEP	Neighborhood
BP	GO:0010073	meristem maintenance	IEP	Neighborhood
BP	GO:0010224	response to UV-B	IEP	Neighborhood
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	Neighborhood
BP	GO:0010254	nectary development	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0010334	sesquiterpene synthase activity	IEP	Neighborhood
BP	GO:0010466	negative regulation of peptidase activity	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010555	response to mannitol	IEP	Neighborhood
BP	GO:0010582	floral meristem determinacy	IEP	Neighborhood
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Neighborhood
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015210	uracil transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015391	nucleobase:cation symporter activity	IEP	Neighborhood
MF	GO:0015505	uracil:cation symporter activity	IEP	Neighborhood
MF	GO:0015603	iron chelate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015675	nickel cation transport	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
BP	GO:0016104	triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
MF	GO:0016157	sucrose synthase activity	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
MF	GO:0016405	CoA-ligase activity	IEP	Neighborhood
MF	GO:0016408	C-acyltransferase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0016801	hydrolase activity, acting on ether bonds	IEP	Neighborhood
MF	GO:0016803	ether hydrolase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0016878	acid-thiol ligase activity	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
BP	GO:0019605	butyrate metabolic process	IEP	Neighborhood
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0030007	cellular potassium ion homeostasis	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
MF	GO:0030744	luteolin O-methyltransferase activity	IEP	Neighborhood
MF	GO:0030755	quercetin 3-O-methyltransferase activity	IEP	Neighborhood
CC	GO:0031350	intrinsic component of plastid membrane	IEP	Neighborhood
CC	GO:0031351	integral component of plastid membrane	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
MF	GO:0033799	myricetin 3'-O-methyltransferase activity	IEP	Neighborhood
MF	GO:0034002	(R)-limonene synthase activity	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
MF	GO:0034768	(E)-beta-ocimene synthase activity	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0042214	terpene metabolic process	IEP	Neighborhood
BP	GO:0042539	hypotonic salinity response	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0042816	vitamin B6 metabolic process	IEP	Neighborhood
BP	GO:0042817	pyridoxal metabolic process	IEP	Neighborhood
BP	GO:0042819	vitamin B6 biosynthetic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0043692	monoterpene metabolic process	IEP	Neighborhood
BP	GO:0043693	monoterpene biosynthetic process	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0045861	negative regulation of proteolysis	IEP	Neighborhood
MF	GO:0046030	inositol trisphosphate phosphatase activity	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0046246	terpene biosynthetic process	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0046352	disaccharide catabolic process	IEP	Neighborhood
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0047209	coniferyl-alcohol glucosyltransferase activity	IEP	Neighborhood
MF	GO:0047760	butyrate-CoA ligase activity	IEP	Neighborhood
MF	GO:0047763	caffeate O-methyltransferase activity	IEP	Neighborhood
MF	GO:0047769	arogenate dehydratase activity	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048479	style development	IEP	Neighborhood
BP	GO:0048511	rhythmic process	IEP	Neighborhood
MF	GO:0050550	pinene synthase activity	IEP	Neighborhood
MF	GO:0050551	myrcene synthase activity	IEP	Neighborhood
MF	GO:0050552	(4S)-limonene synthase activity	IEP	Neighborhood
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051552	flavone metabolic process	IEP	Neighborhood
BP	GO:0051553	flavone biosynthetic process	IEP	Neighborhood
BP	GO:0051554	flavonol metabolic process	IEP	Neighborhood
BP	GO:0051555	flavonol biosynthetic process	IEP	Neighborhood
BP	GO:0051592	response to calcium ion	IEP	Neighborhood
BP	GO:0051761	sesquiterpene metabolic process	IEP	Neighborhood
BP	GO:0051762	sesquiterpene biosynthetic process	IEP	Neighborhood
MF	GO:0051980	iron-nicotianamine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0052547	regulation of peptidase activity	IEP	Neighborhood
BP	GO:0052548	regulation of endopeptidase activity	IEP	Neighborhood
MF	GO:0052745	inositol phosphate phosphatase activity	IEP	Neighborhood
BP	GO:0055075	potassium ion homeostasis	IEP	Neighborhood
BP	GO:0071836	nectar secretion	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0072708	response to sorbitol	IEP	Neighborhood
MF	GO:0080015	sabinene synthase activity	IEP	Neighborhood
BP	GO:0080086	stamen filament development	IEP	Neighborhood
MF	GO:0090599	alpha-glucosidase activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Neighborhood
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006843	PAP/fibrillin_dom	93	308

External Links

No external refs found!

AT4G04020 (FIB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation