Mp5g06430.1

Description : component CAP-C/SMC4 of condensin I/II complex

Gene families : OG0003989 (Archaeplastida) Phylogenetic Tree(s): OG0003989_tree ,
OG_05_0007105 (LandPlants) Phylogenetic Tree(s): OG_05_0007105_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp5g06430.1
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00079920	evm_27.TU.AmTr_v1...	Cell cycle.mitosis and meiosis.chromatin...	0.14	Archaeplastida
AT5G48600	ATCAP-C, ATSMC4,...	structural maintenance of chromosome 3	0.03	Archaeplastida
Cpa\|evm.model.tig00000711.41	No alias	Cell cycle.mitosis and meiosis.chromatin...	0.06	Archaeplastida
Cre12.g493400	No alias	Cell cycle.mitosis and meiosis.chromatin...	0.11	Archaeplastida
GSVIVT01011408001	No alias	Cell cycle.mitosis and meiosis.chromatin...	0.17	Archaeplastida
Gb_03310	No alias	component CAP-C/SMC4 of condensin I/II complex	0.16	Archaeplastida
LOC_Os05g41750.1	No alias	component CAP-C/SMC4 of condensin I/II complex	0.13	Archaeplastida
MA_10325649g0010	No alias	Structural maintenance of chromosomes protein 4...	0.02	Archaeplastida
MA_10432810g0010	No alias	no hits & (original description: none)	0.22	Archaeplastida
MA_317249g0010	No alias	component CAP-C/SMC4 of condensin I/II complex	0.24	Archaeplastida
MA_7369647g0010	No alias	Structural maintenance of chromosomes protein 4...	0.22	Archaeplastida
MA_82161g0010	No alias	Structural maintenance of chromosomes protein 4...	0.2	Archaeplastida
MA_9366726g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
Pp3c18_16050V3.1	No alias	structural maintenance of chromosome 3	0.07	Archaeplastida
Solyc02g087980.3.1	No alias	component CAP-C/SMC4 of condensin I/II complex	0.18	Archaeplastida
Zm00001e032031_P001	No alias	component CAP-C/SMC4 of condensin I/II complex	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
BP	GO:0000725	recombinational repair	IEP	Neighborhood
CC	GO:0000775	chromosome, centromeric region	IEP	Neighborhood
CC	GO:0000796	condensin complex	IEP	Neighborhood
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003777	microtubule motor activity	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003896	DNA primase activity	IEP	Neighborhood
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006323	DNA packaging	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007018	microtubule-based movement	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0007076	mitotic chromosome condensation	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
BP	GO:0030261	chromosome condensation	IEP	Neighborhood
CC	GO:0030915	Smc5-Smc6 complex	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0033044	regulation of chromosome organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
CC	GO:0042555	MCM complex	IEP	Neighborhood
BP	GO:0043086	negative regulation of catalytic activity	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044092	negative regulation of molecular function	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051095	regulation of helicase activity	IEP	Neighborhood
BP	GO:0051097	negative regulation of helicase activity	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051336	regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
CC	GO:0071821	FANCM-MHF complex	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098687	chromosomal region	IEP	Neighborhood
CC	GO:0106068	SUMO ligase complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Neighborhood
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Neighborhood
BP	GO:1905774	regulation of DNA helicase activity	IEP	Neighborhood
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Neighborhood
BP	GO:2001251	negative regulation of chromosome organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	24	1223
IPR010935	SMC_hinge	554	670

External Links

No external refs found!

Mp5g06430.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation