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  5. Mp5g10240.1

Mp5g10240.1


Description : histone deacetylase (HDT/HD2)


Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g10240.1
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00194480 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G27840 HDA13, HDT04, HDT4 histone deacetylase-related / HD-related 0.04 Archaeplastida
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.04 Archaeplastida
Cpa|evm.model.tig00000388.65 No alias Protein modification.protein folding and quality... 0.04 Archaeplastida
Cpa|evm.model.tig00000983.33 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
LOC_Os05g51830.1 No alias histone deacetylase (HDT/HD2) 0.03 Archaeplastida
MA_3905g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida
Pp3c2_11820V3.1 No alias histone deacetylase 3 0.02 Archaeplastida
Pp3c2_6080V3.1 No alias histone deacetylase 3 0.02 Archaeplastida
Solyc09g009030.4.1 No alias histone deacetylase (HDT/HD2) 0.06 Archaeplastida
Solyc11g066840.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e027707_P004 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!