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Description : protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)
Gene families : OG0003244 (Archaeplastida) Phylogenetic Tree(s): OG0003244_tree ,
OG_05_0003710 (LandPlants) Phylogenetic Tree(s): OG_05_0003710_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp6g10790.1 | |
| Cluster | HCCA: Cluster_61 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00165040 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| AT4G03430 | STA1, EMB2770 | pre-mRNA splicing factor-related | 0.02 | Archaeplastida | |
| Cpa|evm.model.tig00000880.19 | No alias | Protein STABILIZED1 OS=Arabidopsis thaliana | 0.04 | Archaeplastida | |
| Cre14.g633650 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
| GSVIVT01030385001 | No alias | Protein STABILIZED1 OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
| LOC_Os10g35550.1 | No alias | protein factor PRPF6/PRP1/STA1 of U5 small nuclear... | 0.02 | Archaeplastida | |
| MA_550650g0010 | No alias | No annotation | 0.02 | Archaeplastida | |
| Pp3c24_11640V3.1 | No alias | pre-mRNA splicing factor-related | 0.02 | Archaeplastida | |
| Smo126394 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Solyc07g054200.4.1 | No alias | no hits & (original description: none) | 0.08 | Archaeplastida | |
| Zm00001e018293_P001 | No alias | protein factor PRPF6/PRP1/STA1 of U5 small nuclear... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| MF | GO:0017069 | snRNA binding | IEP | Neighborhood |
| MF | GO:0017070 | U6 snRNA binding | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0030623 | U5 snRNA binding | IEP | Neighborhood |
| MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR010491 | PRP1_N | 18 | 184 |
| No external refs found! |