AT4G09450

Description : Duplicated homeodomain-like superfamily protein

Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0017394 (LandPlants) Phylogenetic Tree(s): OG_05_0017394_tree ,
OG_06_0016926 (SeedPlants) Phylogenetic Tree(s): OG_06_0016926_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G09450
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AT1G19510	RL5, RSM4, ATRL5	RAD-like 5	0.12	Archaeplastida
AT3G10585	No alias	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT3G10595	No alias	Duplicated homeodomain-like superfamily protein	0.09	Archaeplastida
AT5G23650	No alias	Homeodomain-like transcriptional regulator	0.08	Archaeplastida
AT5G47290	No alias	myb family transcription factor	0.04	Archaeplastida
AT5G61620	No alias	myb-like transcription factor family protein	0.04	Archaeplastida
GSVIVT01015223001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
LOC_Os03g62100.1	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Pp3c15_23110V3.1	No alias	myb-like transcription factor family protein	0.02	Archaeplastida
Solyc02g082390.1.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
Zm00001e019254_P001	No alias	transcription factor (MYB-related)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	Neighborhood
MF	GO:0015089	high-affinity copper ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015114	phosphate ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
BP	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	92	136

External Links

No external refs found!

AT4G09450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation