- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : basal transcription factor (TFIa/RRN3)
Gene families : OG0003487 (Archaeplastida) Phylogenetic Tree(s): OG0003487_tree ,
OG_05_0003458 (LandPlants) Phylogenetic Tree(s): OG_05_0003458_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp6g17000.1 | |
| Cluster | HCCA: Cluster_153 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G34750 | No alias | RNA polymerase I specific transcription initiation... | 0.02 | Archaeplastida | |
| MA_9169447g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Pp3c21_14490V3.1 | No alias | RNA polymerase I specific transcription initiation... | 0.02 | Archaeplastida | |
| Zm00001e013105_P001 | No alias | basal transcription factor (TFIa/RRN3) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Neighborhood |
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | Neighborhood |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
| MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
| CC | GO:0005777 | peroxisome | IEP | Neighborhood |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Neighborhood |
| BP | GO:0006547 | histidine metabolic process | IEP | Neighborhood |
| BP | GO:0006623 | protein targeting to vacuole | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| BP | GO:0007031 | peroxisome organization | IEP | Neighborhood |
| BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
| BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | Neighborhood |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0019211 | phosphatase activator activity | IEP | Neighborhood |
| CC | GO:0042579 | microbody | IEP | Neighborhood |
| MF | GO:0042802 | identical protein binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0044445 | cytosolic part | IEP | Neighborhood |
| BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Neighborhood |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
| BP | GO:0072665 | protein localization to vacuole | IEP | Neighborhood |
| BP | GO:0072666 | establishment of protein localization to vacuole | IEP | Neighborhood |
| CC | GO:0090730 | Las1 complex | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| CC | GO:1902555 | endoribonuclease complex | IEP | Neighborhood |
| CC | GO:1902911 | protein kinase complex | IEP | Neighborhood |
| BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
| CC | GO:1905348 | endonuclease complex | IEP | Neighborhood |
| CC | GO:1905354 | exoribonuclease complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007991 | RNA_pol_I_trans_ini_fac_RRN3 | 33 | 596 |
| No external refs found! |