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  5. Mp7g12890.1

Mp7g12890.1


Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (sp|q84t03|rh27_orysj : 647.0)


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003742 (LandPlants) Phylogenetic Tree(s): OG_05_0003742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g12890.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.07 Archaeplastida
AMTR_s00007p00266810 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00062p00159540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT2G40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.19 Archaeplastida
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.11 Archaeplastida
AT5G05450 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT5G54910 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000441.11 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00020684.38 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.06 Archaeplastida
Cre03.g156150 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.24 Archaeplastida
Cre03.g188550 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.16 Archaeplastida
Cre06.g282600 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.07 Archaeplastida
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.3 Archaeplastida
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.16 Archaeplastida
GSVIVT01015034001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01032750001 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037636001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.14 Archaeplastida
Gb_06702 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
Gb_12810 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.05 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.05 Archaeplastida
LOC_Os01g07080.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.13 Archaeplastida
LOC_Os03g58810.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.15 Archaeplastida
LOC_Os05g01990.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os07g33340.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.06 Archaeplastida
MA_10334041g0020 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.04 Archaeplastida
MA_109969g0010 No alias DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... 0.02 Archaeplastida
MA_7914832g0010 No alias No annotation 0.01 Archaeplastida
Pp3c11_510V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Pp3c17_13450V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 Archaeplastida
Pp3c1_22540V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.22 Archaeplastida
Pp3c4_14810V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.16 Archaeplastida
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.09 Archaeplastida
Smo230685 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.06 Archaeplastida
Solyc02g078880.4.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g114370.4.1 No alias no hits & (original description: none) 0.25 Archaeplastida
Solyc07g064520.3.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.2 Archaeplastida
Zm00001e010480_P001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.16 Archaeplastida
Zm00001e011842_P001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.14 Archaeplastida
Zm00001e016823_P002 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.12 Archaeplastida
Zm00001e027024_P001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003911 DNA ligase (NAD+) activity IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004358 glutamate N-acetyltransferase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006525 arginine metabolic process IEP Neighborhood
BP GO:0006526 arginine biosynthetic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 158 329
IPR001650 Helicase_C 371 474
IPR025313 DUF4217 516 576
No external refs found!