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  5. Mp8g09170.1

Mp8g09170.1


Description : component SRm160 of RNA quality control Exon Junction complex


Gene families : OG0004040 (Archaeplastida) Phylogenetic Tree(s): OG0004040_tree ,
OG_05_0003861 (LandPlants) Phylogenetic Tree(s): OG_05_0003861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g09170.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
AT2G29210 No alias splicing factor PWI domain-containing protein 0.03 Archaeplastida
Cre16.g678050 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
GSVIVT01024906001 No alias RNA processing.RNA quality control Exon Junction complex... 0.07 Archaeplastida
Gb_33063 No alias component SRm160 of RNA quality control Exon Junction complex 0.06 Archaeplastida
MA_1065g0010 No alias component SRm160 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Pp3c3_30240V3.1 No alias splicing factor PWI domain-containing protein 0.03 Archaeplastida
Solyc09g030390.3.1 No alias component SRm160 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Zm00001e001194_P001 No alias component SRm160 of RNA quality control Exon Junction complex 0.07 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000124 SAGA complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002483 PWI_dom 46 114
No external refs found!