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  5. AT4G13100

AT4G13100


Description : RING/U-box superfamily protein


Gene families : OG0002546 (Archaeplastida) Phylogenetic Tree(s): OG0002546_tree ,
OG_05_0001754 (LandPlants) Phylogenetic Tree(s): OG_05_0001754_tree ,
OG_06_0001878 (SeedPlants) Phylogenetic Tree(s): OG_06_0001878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G13100
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003308001 No alias No description available 0.03 Archaeplastida
GSVIVT01030507001 No alias No description available 0.04 Archaeplastida
LOC_Os08g41520.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g081180.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc09g059990.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000210 NAD+ diphosphatase activity IEP Neighborhood
BP GO:0002215 defense response to nematode IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0003988 acetyl-CoA C-acyltransferase activity IEP Neighborhood
MF GO:0004300 enoyl-CoA hydratase activity IEP Neighborhood
MF GO:0004301 epoxide hydrolase activity IEP Neighborhood
MF GO:0004445 inositol-polyphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0004506 squalene monooxygenase activity IEP Neighborhood
MF GO:0004551 nucleotide diphosphatase activity IEP Neighborhood
MF GO:0004564 beta-fructofuranosidase activity IEP Neighborhood
MF GO:0004575 sucrose alpha-glucosidase activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0004679 AMP-activated protein kinase activity IEP Neighborhood
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004829 threonine-tRNA ligase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
CC GO:0005955 calcineurin complex IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0005987 sucrose catabolic process IEP Neighborhood
BP GO:0006195 purine nucleotide catabolic process IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006435 threonyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006571 tyrosine biosynthetic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006714 sesquiterpenoid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006971 hypotonic response IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009154 purine ribonucleotide catabolic process IEP Neighborhood
BP GO:0009261 ribonucleotide catabolic process IEP Neighborhood
BP GO:0009299 mRNA transcription IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009313 oligosaccharide catabolic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009413 response to flooding IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009503 thylakoid light-harvesting complex IEP Neighborhood
CC GO:0009517 PSII associated light-harvesting complex II IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009645 response to low light intensity stimulus IEP Neighborhood
MF GO:0009672 auxin:proton symporter activity IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009819 drought recovery IEP Neighborhood
BP GO:0009827 plant-type cell wall modification IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009886 post-embryonic animal morphogenesis IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009908 flower development IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010117 photoprotection IEP Neighborhood
BP GO:0010205 photoinhibition IEP Neighborhood
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Neighborhood
BP GO:0010254 nectary development IEP Neighborhood
CC GO:0010287 plastoglobule IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0010334 sesquiterpene synthase activity IEP Neighborhood
BP GO:0010466 negative regulation of peptidase activity IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
BP GO:0010555 response to mannitol IEP Neighborhood
MF GO:0010945 CoA pyrophosphatase activity IEP Neighborhood
BP GO:0010951 negative regulation of endopeptidase activity IEP Neighborhood
MF GO:0015099 nickel cation transmembrane transporter activity IEP Neighborhood
MF GO:0015603 iron chelate transmembrane transporter activity IEP Neighborhood
BP GO:0015675 nickel cation transport IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016106 sesquiterpenoid biosynthetic process IEP Neighborhood
BP GO:0016122 xanthophyll metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016207 4-coumarate-CoA ligase activity IEP Neighborhood
MF GO:0016405 CoA-ligase activity IEP Neighborhood
MF GO:0016408 C-acyltransferase activity IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016794 diphosphoric monoester hydrolase activity IEP Neighborhood
MF GO:0016801 hydrolase activity, acting on ether bonds IEP Neighborhood
MF GO:0016803 ether hydrolase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016878 acid-thiol ligase activity IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019605 butyrate metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0030007 cellular potassium ion homeostasis IEP Neighborhood
BP GO:0030162 regulation of proteolysis IEP Neighborhood
MF GO:0030744 luteolin O-methyltransferase activity IEP Neighborhood
MF GO:0030755 quercetin 3-O-methyltransferase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
CC GO:0031350 intrinsic component of plastid membrane IEP Neighborhood
CC GO:0031351 integral component of plastid membrane IEP Neighborhood
CC GO:0031977 thylakoid lumen IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032928 regulation of superoxide anion generation IEP Neighborhood
MF GO:0033799 myricetin 3'-O-methyltransferase activity IEP Neighborhood
BP GO:0033869 nucleoside bisphosphate catabolic process IEP Neighborhood
MF GO:0034002 (R)-limonene synthase activity IEP Neighborhood
BP GO:0034031 ribonucleoside bisphosphate catabolic process IEP Neighborhood
BP GO:0034034 purine nucleoside bisphosphate catabolic process IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
MF GO:0034768 (E)-beta-ocimene synthase activity IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0042214 terpene metabolic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042539 hypotonic salinity response IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043692 monoterpene metabolic process IEP Neighborhood
BP GO:0043693 monoterpene biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0045596 negative regulation of cell differentiation IEP Neighborhood
BP GO:0045861 negative regulation of proteolysis IEP Neighborhood
MF GO:0046030 inositol trisphosphate phosphatase activity IEP Neighborhood
BP GO:0046246 terpene biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046352 disaccharide catabolic process IEP Neighborhood
BP GO:0046459 short-chain fatty acid metabolic process IEP Neighborhood
MF GO:0047209 coniferyl-alcohol glucosyltransferase activity IEP Neighborhood
MF GO:0047760 butyrate-CoA ligase activity IEP Neighborhood
MF GO:0047763 caffeate O-methyltransferase activity IEP Neighborhood
MF GO:0047769 arogenate dehydratase activity IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048440 carpel development IEP Neighborhood
BP GO:0048441 petal development IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048479 style development IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0048497 maintenance of floral organ identity IEP Neighborhood
BP GO:0048507 meristem development IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048608 reproductive structure development IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0050550 pinene synthase activity IEP Neighborhood
MF GO:0050551 myrcene synthase activity IEP Neighborhood
MF GO:0050552 (4S)-limonene synthase activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0051552 flavone metabolic process IEP Neighborhood
BP GO:0051553 flavone biosynthetic process IEP Neighborhood
BP GO:0051554 flavonol metabolic process IEP Neighborhood
BP GO:0051555 flavonol biosynthetic process IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0051761 sesquiterpene metabolic process IEP Neighborhood
BP GO:0051762 sesquiterpene biosynthetic process IEP Neighborhood
MF GO:0051980 iron-nicotianamine transmembrane transporter activity IEP Neighborhood
BP GO:0052547 regulation of peptidase activity IEP Neighborhood
BP GO:0052548 regulation of endopeptidase activity IEP Neighborhood
MF GO:0052745 inositol phosphate phosphatase activity IEP Neighborhood
BP GO:0055075 potassium ion homeostasis IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071836 nectar secretion IEP Neighborhood
BP GO:0072523 purine-containing compound catabolic process IEP Neighborhood
BP GO:0072708 response to sorbitol IEP Neighborhood
MF GO:0080015 sabinene synthase activity IEP Neighborhood
BP GO:0080086 stamen filament development IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090322 regulation of superoxide metabolic process IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
MF GO:0090599 alpha-glucosidase activity IEP Neighborhood
BP GO:0090700 maintenance of plant organ identity IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
BP GO:1902347 response to strigolactone IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905156 negative regulation of photosynthesis IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
BP GO:2001293 malonyl-CoA metabolic process IEP Neighborhood
BP GO:2001294 malonyl-CoA catabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!