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  5. Pp3c10_18520V3.1

Pp3c10_18520V3.1


Description : Sec23/Sec24 protein transport family protein


Gene families : OG0001193 (Archaeplastida) Phylogenetic Tree(s): OG0001193_tree ,
OG_05_0001066 (LandPlants) Phylogenetic Tree(s): OG_05_0001066_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_18520V3.1
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AT1G05520 No alias Sec23/Sec24 protein transport family protein 0.04 Archaeplastida
AT3G23660 No alias Sec23/Sec24 protein transport family protein 0.03 Archaeplastida
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Cre03.g180850 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
GSVIVT01026719001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 Archaeplastida
GSVIVT01031567001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Gb_05558 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 Archaeplastida
LOC_Os11g24560.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.08 Archaeplastida
Mp7g12190.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
Pp3c6_940V3.1 No alias Sec23/Sec24 protein transport family protein 0.03 Archaeplastida
Smo107900 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Smo168140 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 Archaeplastida
Solyc01g081070.3.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 Archaeplastida
Solyc09g092680.4.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
Zm00001e008888_P001 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.05 Archaeplastida
Zm00001e009959_P002 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 Archaeplastida
Zm00001e021415_P001 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004619 phosphoglycerate mutase activity IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006007 glucose catabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019320 hexose catabolic process IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046365 monosaccharide catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 58 96
IPR006900 Sec23/24_helical_dom 538 636
IPR007123 Gelsolin-like_dom 651 738
IPR006896 Sec23/24_trunk_dom 132 407
IPR012990 Sec23_24_beta_S 418 521
No external refs found!