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  5. Pp3c10_3760V3.1

Pp3c10_3760V3.1


Description : DNA repair-recombination protein (RAD50)


Gene families : OG0005485 (Archaeplastida) Phylogenetic Tree(s): OG0005485_tree ,
OG_05_0008197 (LandPlants) Phylogenetic Tree(s): OG_05_0008197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_3760V3.1
Cluster HCCA: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00258230 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.02 Archaeplastida
AT2G31970 RAD50, ATRAD50 DNA repair-recombination protein (RAD50) 0.04 Archaeplastida
Gb_12673 No alias component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.05 Archaeplastida
MA_10429947g0010 No alias component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 Archaeplastida
Mp5g04390.1 No alias component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 Archaeplastida
Smo405818 No alias DNA damage response.DNA repair mechanisms.homologous... 0.02 Archaeplastida
Solyc05g053800.3.1 No alias component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.03 Archaeplastida
Zm00001e022614_P001 No alias component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!