1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c11_12600V3.1

Pp3c11_12600V3.1


Description : Coatomer, alpha subunit


Gene families : OG0002801 (Archaeplastida) Phylogenetic Tree(s): OG0002801_tree ,
OG_05_0002931 (LandPlants) Phylogenetic Tree(s): OG_05_0002931_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_12600V3.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 Archaeplastida
AT1G62020 No alias Coatomer, alpha subunit 0.05 Archaeplastida
AT2G21390 No alias Coatomer, alpha subunit 0.07 Archaeplastida
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Cre13.g565850 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 Archaeplastida
Gb_09624 No alias subunit alpha of coat protein complex 0.04 Archaeplastida
Gb_15817 No alias subunit alpha of coat protein complex 0.04 Archaeplastida
LOC_Os03g50340.1 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
LOC_Os03g50350.1 No alias subunit alpha of coat protein complex 0.11 Archaeplastida
LOC_Os09g04110.1 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.03 Archaeplastida
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.02 Archaeplastida
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
Smo85610 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Solyc04g080980.2.1 No alias subunit alpha of coat protein complex 0.06 Archaeplastida
Solyc07g032100.3.1 No alias subunit alpha of coat protein complex 0.09 Archaeplastida
Zm00001e005441_P001 No alias subunit alpha of coat protein complex 0.04 Archaeplastida
Zm00001e012192_P001 No alias subunit alpha of coat protein complex 0.03 Archaeplastida
Zm00001e016505_P002 No alias subunit alpha of coat protein complex 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!