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  5. Pp3c11_14450V3.1

Pp3c11_14450V3.1


Description : splicing factor, putative


Gene families : OG0002725 (Archaeplastida) Phylogenetic Tree(s): OG0002725_tree ,
OG_05_0002710 (LandPlants) Phylogenetic Tree(s): OG_05_0002710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_14450V3.1
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AT5G64270 No alias splicing factor, putative 0.08 Archaeplastida
Cpa|evm.model.tig00000402.41 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Cre12.g494100 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
GSVIVT01025852001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Gb_14294 No alias component SF3B1 of splicing factor 3B complex 0.02 Archaeplastida
Gb_20157 No alias component SF3B1 of splicing factor 3B complex 0.07 Archaeplastida
LOC_Os02g04950.1 No alias component SF3B1 of splicing factor 3B complex 0.02 Archaeplastida
LOC_Os02g05310.4 No alias component SF3B1 of splicing factor 3B complex 0.05 Archaeplastida
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.03 Archaeplastida
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.03 Archaeplastida
Smo97336 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Zm00001e013644_P003 No alias No annotation 0.06 Archaeplastida
Zm00001e025224_P001 No alias component SF3B1 of splicing factor 3B complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR015016 SF3b_su1 310 437
No external refs found!