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  5. Pp3c11_24910V3.1

Pp3c11_24910V3.1


Description : DEAD box RNA helicase 1


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0001582 (LandPlants) Phylogenetic Tree(s): OG_05_0001582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_24910V3.1
Cluster HCCA: Cluster_279

Target Alias Description ECC score Gene Family Method Actions
AT5G63120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Cpa|evm.model.tig00001049.35 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.01 Archaeplastida
MA_5118g0010 No alias ATP-dependent RNA helicase-like protein DB10... 0.02 Archaeplastida
Mp4g22900.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e016763_P001 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 437 545
IPR011545 DEAD/DEAH_box_helicase_dom 230 400
IPR001202 WW_dom 19 49
No external refs found!