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  5. Pp3c11_8530V3.1

Pp3c11_8530V3.1


Description : HMG (high mobility group) box protein


Gene families : OG0002362 (Archaeplastida) Phylogenetic Tree(s): OG0002362_tree ,
OG_05_0006706 (LandPlants) Phylogenetic Tree(s): OG_05_0006706_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_8530V3.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.09 Archaeplastida
AT4G11080 No alias HMG (high mobility group) box protein 0.08 Archaeplastida
AT4G23800 No alias HMG (high mobility group) box protein 0.14 Archaeplastida
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.12 Archaeplastida
Gb_00374 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.1 Archaeplastida
LOC_Os02g15810.1 No alias High mobility group B protein 13 OS=Arabidopsis thaliana... 0.1 Archaeplastida
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.06 Archaeplastida
Solyc08g082070.3.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e014266_P001 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.14 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 145 206
IPR009071 HMG_box_dom 261 327
IPR009071 HMG_box_dom 405 473
No external refs found!