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  5. Pp3c12_16950V3.1

Pp3c12_16950V3.1


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG0003917 (Archaeplastida) Phylogenetic Tree(s): OG0003917_tree ,
OG_05_0003953 (LandPlants) Phylogenetic Tree(s): OG_05_0003953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_16950V3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00164390 evm_27.TU.AmTr_v1... Histone-binding protein MSI1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00001493.9 No alias No description available 0.03 Archaeplastida
Cre17.g724850 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01015210001 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_37351 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os11g03990.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.01 Archaeplastida
LOC_Os12g03822.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.02 Archaeplastida
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.11 Archaeplastida
Solyc07g039200.4.1 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e020846_P004 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e027495_P001 No alias WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 58 125
IPR001680 WD40_repeat 331 364
IPR001680 WD40_repeat 286 320
No external refs found!