Pp3c13_15330V3.1

Description : Ribosomal protein L4/L1 family

Gene families : OG0004129 (Archaeplastida) Phylogenetic Tree(s): OG0004129_tree ,
OG_05_0006270 (LandPlants) Phylogenetic Tree(s): OG_05_0006270_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c13_15330V3.1
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00101p00151570	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	Archaeplastida
AT2G20060	No alias	Ribosomal protein L4/L1 family	0.03	Archaeplastida
Cre12.g520400	No alias	No description available	0.02	Archaeplastida
GSVIVT01004810001	No alias	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
Gb_04540	No alias	component mtRPL4 of large ribosomal subunit proteome	0.05	Archaeplastida
LOC_Os11g37510.1	No alias	component mtRPL4 of large ribosomal subunit proteome	0.1	Archaeplastida
MA_10437219g0010	No alias	component mtRPL4 of large ribosomal subunit proteome	0.07	Archaeplastida
Mp4g00020.1	No alias	component mtRPL4 of large ribosomal subunit proteome	0.04	Archaeplastida
Solyc12g088730.2.1	No alias	component mtRPL4 of large ribosomal subunit proteome	0.07	Archaeplastida
Zm00001e006048_P001	No alias	component mtRPL4 of large ribosomal subunit proteome	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	74	262

External Links

No external refs found!

Pp3c13_15330V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation