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  5. Pp3c13_20230V3.1

Pp3c13_20230V3.1


Description : histone deacetylase 1


Gene families : OG0000845 (Archaeplastida) Phylogenetic Tree(s): OG0000845_tree ,
OG_05_0001102 (LandPlants) Phylogenetic Tree(s): OG_05_0001102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_20230V3.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.121 No alias Chromatin organisation.histone modifications.histone... 0.01 Archaeplastida
Cpa|evm.model.tig00001307.14 No alias Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase... 0.02 Archaeplastida
GSVIVT01030885001 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Gb_07358 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Gb_10850 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Gb_12025 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Smo84957 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!