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  5. Pp3c13_22260V3.1

Pp3c13_22260V3.1


Description : Sas10/U3 ribonucleoprotein (Utp) family protein


Gene families : OG0001925 (Archaeplastida) Phylogenetic Tree(s): OG0001925_tree ,
OG_05_0005557 (LandPlants) Phylogenetic Tree(s): OG_05_0005557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_22260V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G07840 No alias Sas10/Utp3/C1D family 0.09 Archaeplastida
AT2G43650 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein 0.07 Archaeplastida
Cpa|evm.model.tig00022075.45 No alias No description available 0.05 Archaeplastida
Cre09.g394399 No alias No description available 0.19 Archaeplastida
GSVIVT01009200001 No alias No description available 0.09 Archaeplastida
GSVIVT01038137001 No alias No description available 0.14 Archaeplastida
Gb_25856 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_25857 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g01510.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_348135g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_42345g0010 No alias No annotation 0.07 Archaeplastida
Mp4g18120.1 No alias no hits & (original description: none) 0.17 Archaeplastida
Smo405212 No alias No description available 0.06 Archaeplastida
Solyc04g076560.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc11g072390.2.1 No alias no hits & (original description: none) 0.16 Archaeplastida
Zm00001e003450_P001 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e028507_P001 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!