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  5. AT4G17895

AT4G17895 (UBP20)


Aliases : UBP20

Description : ubiquitin-specific protease 20


Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0002311 (LandPlants) Phylogenetic Tree(s): OG_05_0002311_tree ,
OG_06_0001644 (SeedPlants) Phylogenetic Tree(s): OG_06_0001644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17895
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT5G65450 UBP17 ubiquitin-specific protease 17 0.03 Archaeplastida
Cpa|evm.model.tig00020918.7 No alias Protein degradation.peptidase families.cysteine-type... 0.01 Archaeplastida
Gb_09344 No alias Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os02g46650.1 No alias Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis... 0.03 Archaeplastida
MA_10246077g0010 No alias Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis... 0.01 Archaeplastida
Mp3g16110.1 No alias deubiquitinase (UBP23) 0.02 Archaeplastida
Zm00001e022516_P001 No alias deubiquitinase (UBP15-21) 0.02 Archaeplastida
Zm00001e024878_P003 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000026 alpha-1,2-mannosyltransferase activity IEP Neighborhood
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004376 glycolipid mannosyltransferase activity IEP Neighborhood
MF GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity IEP Neighborhood
MF GO:0004448 isocitrate dehydrogenase activity IEP Neighborhood
MF GO:0004450 isocitrate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005343 organic acid:sodium symporter activity IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008508 bile acid:sodium symporter activity IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009635 response to herbicide IEP Neighborhood
BP GO:0009636 response to toxic substance IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0010084 specification of animal organ axis polarity IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015125 bile acid transmembrane transporter activity IEP Neighborhood
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030148 sphingolipid biosynthetic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0036503 ERAD pathway IEP Neighborhood
CC GO:0042644 chloroplast nucleoid IEP Neighborhood
CC GO:0042646 plastid nucleoid IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0045140 inositol phosphoceramide synthase activity IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080148 negative regulation of response to water deprivation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140161 monocarboxylate:sodium symporter activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901371 regulation of leaf morphogenesis IEP Neighborhood
BP GO:1901562 response to paraquat IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000025 regulation of leaf formation IEP Neighborhood
BP GO:2000070 regulation of response to water deprivation IEP Neighborhood
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 177 473
No external refs found!