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  5. AT4G17905

AT4G17905 (ATL4H)


Aliases : ATL4H

Description : RING/U-box superfamily protein


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17905
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G15100 RHA2A RING-H2 finger A2A 0.04 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.04 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G41450 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00020629.137 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01000015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01007793001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01024698001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01028038001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_14312 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_14821 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g15110.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g45710.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g46340.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g54830.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g05570.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g49000.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g06150.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g34550.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g37760.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.04 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os12g02210.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10260361g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8710804g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c22_17730V3.1 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c9_3390V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g100100.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc02g067700.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g086950.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g087040.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.09 Archaeplastida
Solyc08g076830.1.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Solyc08g082680.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.1 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e015259_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019438_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001763 morphogenesis of a branching structure IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004630 phospholipase D activity IEP Neighborhood
MF GO:0004816 asparagine-tRNA ligase activity IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006995 cellular response to nitrogen starvation IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010065 primary meristem tissue development IEP Neighborhood
BP GO:0010067 procambium histogenesis IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010223 secondary shoot formation IEP Neighborhood
BP GO:0010346 shoot axis formation IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0043562 cellular response to nitrogen levels IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0048507 meristem development IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0080165 callose deposition in phloem sieve plate IEP Neighborhood
BP GO:0090506 axillary shoot meristem initiation IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 154 197
No external refs found!