AT4G18100


Description : Ribosomal protein L32e


Gene families : OG0001950 (Archaeplastida) Phylogenetic Tree(s): OG0001950_tree ,
OG_05_0001887 (LandPlants) Phylogenetic Tree(s): OG_05_0001887_tree ,
OG_06_0002781 (SeedPlants) Phylogenetic Tree(s): OG_06_0002781_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18100
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.140 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
Cre06.g289550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 Archaeplastida
GSVIVT01005150001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01021377001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
Gb_36437 No alias component RPL32 of LSU proteome component 0.23 Archaeplastida
LOC_Os08g41300.1 No alias component RPL32 of LSU proteome component 0.18 Archaeplastida
LOC_Os09g32500.1 No alias component RPL32 of LSU proteome component 0.37 Archaeplastida
LOC_Os09g32520.1 No alias component RPL32 of LSU proteome component 0.12 Archaeplastida
LOC_Os09g32532.1 No alias component RPL32 of LSU proteome component 0.11 Archaeplastida
MA_10434621g0010 No alias component RPL32 of LSU proteome component 0.06 Archaeplastida
MA_41569g0010 No alias component RPL32 of LSU proteome component 0.18 Archaeplastida
Mp7g12480.1 No alias component RPL32 of LSU proteome component 0.27 Archaeplastida
Pp3c14_10580V3.1 No alias Ribosomal protein L32e 0.19 Archaeplastida
Pp3c17_13590V3.1 No alias Ribosomal protein L32e 0.1 Archaeplastida
Pp3c1_32490V3.1 No alias Ribosomal protein L32e 0.21 Archaeplastida
Pp3c2_9590V3.1 No alias Ribosomal protein L32e 0.28 Archaeplastida
Smo146656 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Solyc02g070310.3.1 No alias component RPL32 of LSU proteome component 0.24 Archaeplastida
Solyc02g150130.1.1 No alias component RPL32 of LSU proteome component 0.03 Archaeplastida
Solyc08g006900.3.1 No alias component RPL32 of LSU proteome component 0.3 Archaeplastida
Zm00001e003623_P002 No alias component RPL32 of LSU proteome component 0.09 Archaeplastida
Zm00001e010105_P002 No alias component RPL32 of LSU proteome component 0.1 Archaeplastida
Zm00001e021938_P001 No alias component RPL32 of LSU proteome component 0.34 Archaeplastida
Zm00001e034604_P001 No alias component RPL32 of LSU proteome component 0.15 Archaeplastida
Zm00001e034606_P001 No alias component RPL32 of LSU proteome component 0.21 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
MF GO:0001072 transcription antitermination factor activity, RNA binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004550 nucleoside diphosphate kinase activity IEP Neighborhood
MF GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016273 arginine N-methyltransferase activity IEP Neighborhood
MF GO:0016274 protein-arginine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016882 cyclo-ligase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030686 90S preribosome IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031125 rRNA 3'-end processing IEP Neighborhood
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Neighborhood
BP GO:0031564 transcription antitermination IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048569 post-embryonic animal organ development IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001515 Ribosomal_L32e 16 122
No external refs found!