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  5. Pp3c14_15250V3.1

Pp3c14_15250V3.1


Description : RAB GTPase homolog A2B


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_15250V3.1
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00189630 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
AT1G09630 ATRABA2A,... RAB GTPase 11C 0.05 Archaeplastida
AT5G65270 AtRABA4a, RABA4a RAB GTPase homolog A4A 0.03 Archaeplastida
GSVIVT01023225001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 Archaeplastida
Gb_30583 No alias A-class RAB GTPase 0.02 Archaeplastida
Gb_37703 No alias A-class RAB GTPase 0.04 Archaeplastida
LOC_Os05g01480.1 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os05g44070.1 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os10g23100.1 No alias A-class RAB GTPase 0.05 Archaeplastida
MA_109703g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_15386g0010 No alias A-class RAB GTPase 0.05 Archaeplastida
Smo158820 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Smo232291 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Solyc02g072180.3.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Solyc07g053480.4.1 No alias A-class RAB GTPase 0.02 Archaeplastida
Solyc10g045550.2.1 No alias A-class RAB GTPase 0.05 Archaeplastida
Zm00001e006210_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e028750_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e038828_P001 No alias A-class RAB GTPase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!