Pp3c14_4160V3.1

Description : Ribosomal protein L6 family protein

Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c14_4160V3.1
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00218700	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
AT1G18540	No alias	Ribosomal protein L6 family protein	0.29	Archaeplastida
AT1G74050	No alias	Ribosomal protein L6 family protein	0.13	Archaeplastida
AT1G74060	No alias	Ribosomal protein L6 family protein	0.14	Archaeplastida
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	Archaeplastida
GSVIVT01032041001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	Archaeplastida
Gb_01604	No alias	component RPL6 of LSU proteome component	0.12	Archaeplastida
LOC_Os02g37862.1	No alias	component RPL6 of LSU proteome component	0.21	Archaeplastida
LOC_Os04g39700.1	No alias	component RPL6 of LSU proteome component	0.18	Archaeplastida
MA_108607g0010	No alias	component RPL6 of LSU proteome component	0.26	Archaeplastida
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.28	Archaeplastida
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	Archaeplastida
Solyc04g014720.4.1	No alias	component RPL6 of LSU proteome component	0.1	Archaeplastida
Solyc05g054070.4.1	No alias	component RPL6 of LSU proteome component	0.11	Archaeplastida
Solyc11g012110.2.1	No alias	component RPL6 of LSU proteome component	0.24	Archaeplastida
Zm00001e014979_P001	No alias	component RPL6 of LSU proteome component	0.16	Archaeplastida
Zm00001e022840_P001	No alias	component RPL6 of LSU proteome component	0.17	Archaeplastida
Zm00001e022841_P001	No alias	component RPL6 of LSU proteome component	0.19	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	124	231

External Links

No external refs found!

Pp3c14_4160V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation