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  5. Pp3c15_1470V3.1

Pp3c15_1470V3.1


Description : RNA helicase family protein


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008312 (LandPlants) Phylogenetic Tree(s): OG_05_0008312_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c15_1470V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.07 Archaeplastida
AT1G27900 No alias RNA helicase family protein 0.02 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.02 Archaeplastida
AT2G47250 No alias RNA helicase family protein 0.02 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.02 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000984.27 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 Archaeplastida
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.02 Archaeplastida
LOC_Os06g23530.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Solyc01g110990.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc09g008120.4.1 No alias RNA helicase (Prp22) 0.05 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.05 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Zm00001e010450_P001 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
Zm00001e016478_P002 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.04 Archaeplastida
Zm00001e028404_P001 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!