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  5. Pp3c16_15410V3.1

Pp3c16_15410V3.1


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG0001875 (Archaeplastida) Phylogenetic Tree(s): OG0001875_tree ,
OG_05_0001802 (LandPlants) Phylogenetic Tree(s): OG_05_0001802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_15410V3.1
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative 0.05 Archaeplastida
AT5G42820 U2AF35B, ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Archaeplastida
Smo230014 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Solyc10g083640.2.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!