Pp3c16_17090V3.1


Description : homolog of carrot EP3-3 chitinase


Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0000272 (LandPlants) Phylogenetic Tree(s): OG_05_0000272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_17090V3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00244170 evm_27.TU.AmTr_v1... Chitinase 3 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AT1G02360 No alias Chitinase family protein 0.02 Archaeplastida
AT2G43580 No alias Chitinase family protein 0.06 Archaeplastida
AT2G43590 No alias Chitinase family protein 0.04 Archaeplastida
GSVIVT01028243001 No alias Chitinase 10 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
GSVIVT01038116001 No alias Endochitinase EP3 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01038126001 No alias Endochitinase EP3 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_03375 No alias Chitinase 10 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_20316 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_20764 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Gb_20766 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g18400.1 No alias Chitinase 10 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g39330.1 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os04g09390.1 No alias Lectin OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
MA_102538g0010 No alias Endochitinase A OS=Zea mays (sp|p29022|chia_maize : 100.0) 0.01 Archaeplastida
MA_10435326g0010 No alias Endochitinase EP3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_18470g0020 No alias Endochitinase A2 OS=Pisum sativum (sp|p21226|chi2_pea : 201.0) 0.02 Archaeplastida
MA_381956g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_80085g0010 No alias Basic endochitinase C OS=Secale cereale... 0.03 Archaeplastida
MA_8921185g0010 No alias Basic endochitinase C OS=Secale cereale... 0.02 Archaeplastida
MA_8960362g0010 No alias Endochitinase 1 OS=Theobroma cacao (sp|q41596|chi1_thecc : 81.6) 0.04 Archaeplastida
MA_9376357g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9682123g0010 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Solyc06g053380.3.1 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e007715_P001 No alias Endochitinase A OS=Zea mays (sp|p29022|chia_maize : 330.0) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
MF GO:0008061 chitin binding IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 58 97
IPR000726 Glyco_hydro_19_cat 124 248
No external refs found!