Pp3c16_17090V3.1

Description : homolog of carrot EP3-3 chitinase

Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0000272 (LandPlants) Phylogenetic Tree(s): OG_05_0000272_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c16_17090V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00244170	evm_27.TU.AmTr_v1...	Chitinase 3 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
AT1G02360	No alias	Chitinase family protein	0.02	Archaeplastida
AT2G43580	No alias	Chitinase family protein	0.06	Archaeplastida
AT2G43590	No alias	Chitinase family protein	0.04	Archaeplastida
GSVIVT01028243001	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
GSVIVT01038116001	No alias	Endochitinase EP3 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01038126001	No alias	Endochitinase EP3 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_03375	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Gb_20316	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Gb_20764	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Gb_20766	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
LOC_Os01g18400.1	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
LOC_Os02g39330.1	No alias	Chitinase 6 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
LOC_Os04g09390.1	No alias	Lectin OS=Oryza sativa subsp. japonica...	0.01	Archaeplastida
MA_102538g0010	No alias	Endochitinase A OS=Zea mays (sp\|p29022\|chia_maize : 100.0)	0.01	Archaeplastida
MA_10435326g0010	No alias	Endochitinase EP3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_18470g0020	No alias	Endochitinase A2 OS=Pisum sativum (sp\|p21226\|chi2_pea : 201.0)	0.02	Archaeplastida
MA_381956g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_80085g0010	No alias	Basic endochitinase C OS=Secale cereale...	0.03	Archaeplastida
MA_8921185g0010	No alias	Basic endochitinase C OS=Secale cereale...	0.02	Archaeplastida
MA_8960362g0010	No alias	Endochitinase 1 OS=Theobroma cacao (sp\|q41596\|chi1_thecc : 81.6)	0.04	Archaeplastida
MA_9376357g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_9682123g0010	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Solyc06g053380.3.1	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Zm00001e007715_P001	No alias	Endochitinase A OS=Zea mays (sp\|p29022\|chia_maize : 330.0)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	Interproscan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008061	chitin binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Neighborhood
CC	GO:0030132	clathrin coat of coated pit	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001002	Chitin-bd_1	58	97
IPR000726	Glyco_hydro_19_cat	124	248

External Links

No external refs found!

Pp3c16_17090V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation