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  5. Pp3c16_4650V3.1

Pp3c16_4650V3.1


Description : transportin 1


Gene families : OG0004680 (Archaeplastida) Phylogenetic Tree(s): OG0004680_tree ,
OG_05_0004644 (LandPlants) Phylogenetic Tree(s): OG_05_0004644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_4650V3.1
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00180430 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
AT2G16950 ATTRN1, TRN1 transportin 1 0.09 Archaeplastida
Cpa|evm.model.tig00001239.7 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
GSVIVT01023974001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
Gb_11406 No alias IMB2 nucleocytoplasmic import karyopherin 0.06 Archaeplastida
MA_10296g0010 No alias Transportin-1 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
MA_38893g0010 No alias Transportin-1 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
Mp7g05740.1 No alias IMB2 nucleocytoplasmic import karyopherin 0.03 Archaeplastida
Solyc01g111780.4.1 No alias IMB2 nucleocytoplasmic import karyopherin 0.11 Archaeplastida
Zm00001e007506_P002 No alias IMB2 nucleocytoplasmic import karyopherin 0.08 Archaeplastida
Zm00001e042007_P001 No alias IMB2 nucleocytoplasmic import karyopherin 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!