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  5. Pp3c16_6070V3.1

Pp3c16_6070V3.1


Description : DNA-directed RNA polymerase family protein


Gene families : OG0007163 (Archaeplastida) Phylogenetic Tree(s): OG0007163_tree ,
OG_05_0005143 (LandPlants) Phylogenetic Tree(s): OG_05_0005143_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_6070V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.05 Archaeplastida
Pp3c20_3310V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.06 Archaeplastida
Pp3c3_35890V3.1 No alias DNA-directed RNA polymerase family protein 0.04 Archaeplastida
Pp3c3_37780V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.02 Archaeplastida
Pp3c5_1420V3.1 No alias nuclear RNA polymerase C2 0.03 Archaeplastida
Pp3c5_18580V3.1 No alias nuclear RNA polymerase A2 0.04 Archaeplastida
Pp3s67_170V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 229 256
IPR007120 DNA-dir_RNAP_su2_dom 324 634
IPR007641 RNA_pol_Rpb2_7 636 718
No external refs found!