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  5. Pp3c16_6660V3.1

Pp3c16_6660V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0032177 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_6660V3.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT2G21610 ATPE11, PE11 pectinesterase 11 0.02 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.02 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g53990.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_18312g0010 No alias pectin methylesterase 0.01 Archaeplastida
MA_19196g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp1g00190.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_24830V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35210V3.1 No alias No annotation 0.03 Archaeplastida
Solyc01g079180.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.01 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc07g065350.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e004804_P001 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 88 178
IPR000070 Pectinesterase_cat 201 382
No external refs found!