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  5. AT4G22090

AT4G22090


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0025026 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G22090
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AT3G07010 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01014682001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
Gb_04024 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.02 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 128 311
No external refs found!