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Description : Small nuclear ribonucleoprotein family protein
Gene families : OG0003300 (Archaeplastida) Phylogenetic Tree(s): OG0003300_tree ,
OG_05_0003792 (LandPlants) Phylogenetic Tree(s): OG_05_0003792_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c17_6070V3.1 | |
| Cluster | HCCA: Cluster_287 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00019p00189060 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | Archaeplastida | |
| AT4G30330 | No alias | Small nuclear ribonucleoprotein family protein | 0.02 | Archaeplastida | |
| Cre08.g385200 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.04 | Archaeplastida | |
| LOC_Os02g03440.1 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.04 | Archaeplastida | |
| LOC_Os08g05530.1 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.02 | Archaeplastida | |
| MA_118124g0010 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.03 | Archaeplastida | |
| Mp5g07450.1 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.03 | Archaeplastida | |
| Smo230895 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | Archaeplastida | |
| Zm00001e016468_P001 | No alias | No annotation | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Neighborhood |
| CC | GO:0005750 | mitochondrial respiratory chain complex III | IEP | Neighborhood |
| CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Neighborhood |
| BP | GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0007021 | tubulin complex assembly | IEP | Neighborhood |
| BP | GO:0007023 | post-chaperonin tubulin folding pathway | IEP | Neighborhood |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Neighborhood |
| MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| MF | GO:0015631 | tubulin binding | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| CC | GO:0019866 | organelle inner membrane | IEP | Neighborhood |
| BP | GO:0022900 | electron transport chain | IEP | Neighborhood |
| BP | GO:0022904 | respiratory electron transport chain | IEP | Neighborhood |
| MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Neighborhood |
| CC | GO:0031090 | organelle membrane | IEP | Neighborhood |
| CC | GO:0031966 | mitochondrial membrane | IEP | Neighborhood |
| MF | GO:0033218 | amide binding | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
| MF | GO:0042277 | peptide binding | IEP | Neighborhood |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044455 | mitochondrial membrane part | IEP | Neighborhood |
| BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
| CC | GO:0045275 | respiratory chain complex III | IEP | Neighborhood |
| MF | GO:0048487 | beta-tubulin binding | IEP | Neighborhood |
| CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
| CC | GO:0070069 | cytochrome complex | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
| CC | GO:0098798 | mitochondrial protein complex | IEP | Neighborhood |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Neighborhood |
| CC | GO:0098803 | respiratory chain complex | IEP | Neighborhood |
| CC | GO:1990204 | oxidoreductase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 19 | 82 |
| No external refs found! |