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  5. AT4G22380

AT4G22380


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004101 (LandPlants) Phylogenetic Tree(s): OG_05_0004101_tree ,
OG_06_0004972 (SeedPlants) Phylogenetic Tree(s): OG_06_0004972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G22380
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01016438001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
LOC_Os03g13800.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
LOC_Os06g16290.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
LOC_Os10g03540.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_670271g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.06 Archaeplastida
Pp3c17_18010V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Archaeplastida
Pp3c9_25980V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Archaeplastida
Smo98161 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Solyc12g038980.2.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
Zm00001e001004_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.06 Archaeplastida
Zm00001e015712_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
Zm00001e023454_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.06 Archaeplastida
Zm00001e038611_P002 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004550 nucleoside diphosphate kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
BP GO:0007000 nucleolus organization IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0010426 DNA methylation on cytosine within a CHH sequence IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0022403 cell cycle phase IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0044848 biological phase IEP Neighborhood
BP GO:0051325 interphase IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 22 111
No external refs found!