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  5. Pp3c18_5400V3.1

Pp3c18_5400V3.1


Description : Chalcone and stilbene synthase family protein


Gene families : OG0000336 (Archaeplastida) Phylogenetic Tree(s): OG0000336_tree ,
OG_05_0000154 (LandPlants) Phylogenetic Tree(s): OG_05_0000154_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_5400V3.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00092780 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.flavonoid synthesis and... 0.04 Archaeplastida
GSVIVT01010565001 No alias Secondary metabolism.phenolics.flavonoid synthesis and... 0.02 Archaeplastida
Gb_01519 No alias chalcone synthase 0.02 Archaeplastida
Gb_32469 No alias chalcone synthase 0.02 Archaeplastida
LOC_Os04g01354.1 No alias Enzyme classification.EC_2 transferases.EC_2.3... 0.02 Archaeplastida
Pp3c21_7660V3.1 No alias Chalcone and stilbene synthase family protein 0.03 Archaeplastida
Pp3c24_13090V3.1 No alias Chalcone and stilbene synthase family protein 0.03 Archaeplastida
Pp3c24_13120V3.1 No alias Chalcone and stilbene synthase family protein 0.02 Archaeplastida
Solyc05g053170.3.1 No alias chalcone synthase 0.02 Archaeplastida
Zm00001e017400_P002 No alias Enzyme classification.EC_2 transferases.EC_2.3... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR012328 Chalcone/stilbene_synth_C 227 373
IPR001099 Chalcone/stilbene_synthase_N 17 106
IPR001099 Chalcone/stilbene_synthase_N 108 214
No external refs found!