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  5. Pp3c19_10330V3.1

Pp3c19_10330V3.1


Description : Ribosomal protein L13 family protein


Gene families : OG0002232 (Archaeplastida) Phylogenetic Tree(s): OG0002232_tree ,
OG_05_0002287 (LandPlants) Phylogenetic Tree(s): OG_05_0002287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_10330V3.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00144180 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AMTR_s00089p00040540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
AT3G07110 No alias Ribosomal protein L13 family protein 0.3 Archaeplastida
AT3G24830 No alias Ribosomal protein L13 family protein 0.47 Archaeplastida
AT4G13170 No alias Ribosomal protein L13 family protein 0.11 Archaeplastida
AT5G48760 No alias Ribosomal protein L13 family protein 0.39 Archaeplastida
Cpa|evm.model.tig00000792.29 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.39 Archaeplastida
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 Archaeplastida
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01028661001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
LOC_Os03g54890.1 No alias component RPL13a of LSU proteome component 0.33 Archaeplastida
LOC_Os07g01870.1 No alias component RPL13a of LSU proteome component 0.06 Archaeplastida
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.31 Archaeplastida
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.42 Archaeplastida
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.43 Archaeplastida
Smo166650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Solyc05g053670.3.1 No alias component RPL13a of LSU proteome component 0.4 Archaeplastida
Solyc09g091740.4.1 No alias component RPL13a of LSU proteome component 0.42 Archaeplastida
Solyc12g098330.3.1 No alias no hits & (original description: none) 0.34 Archaeplastida
Zm00001e005719_P002 No alias component RPL13a of LSU proteome component 0.41 Archaeplastida
Zm00001e012017_P002 No alias component RPL13a of LSU proteome component 0.3 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 120
No external refs found!